Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarocladium_20oryzae_20[genbank_20GCA_5F001972265.1_202016-12-09] 47 sequences; 32,403,370 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq8 123 2e-23 seq6 122 6e-23 seq2 95.1 8e-15 >seq8 Length=2135075 Score = 123 bits (136), Expect = 2e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||| | || ||||||||||| ||||||||||| || |||| |||| Sbjct 385585 AGCACCAAGTGGAGAGTACTCTCCTTCTGGATGTTATAGTCGCTCAGAGTGCGACCATCC 385526 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||| ||||| |||||||||||||| || || || || | || | ||||||||||| Sbjct 385525 TCCAACTGCTTGCCGGCGAAGATCAGGCGCTGTTGATCCGGGGGAATACCCTCCTTGTCC 385466 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || || || | || | || ||| |||||| || | ||| |||||| Sbjct 385465 TGGATCTTGCTCTTCACATTGTCAATGGTGTCGCTGGACTCGACCTCCAGGGTGATGGTC 385406 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || || ||||| ||||| ||||||||||||||| Sbjct 385405 TTGCCGGTGAGCGTCTTGACAAAGATCTGCATG 385373 Score = 95.1 bits (104), Expect = 8e-15 Identities = 135/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||||||| | ||| |||||||| ||||| ||||| || ||| |||| |||| Sbjct 384901 AGAACCAGGTGGAGGGTAGATTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGACCATCC 384842 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| || ||||||||||| || || || || | || | ||||||||||| Sbjct 384841 TCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGTTGATCCGGGGGAATGCCCTCCTTGTCC 384782 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || ||| |||||| | || | || || ||||| |||| || |||||| Sbjct 384781 TGAATCTTTGACTTGACGTTGTCGATGGTGTCGGAGGATTCGACCTCAAGAGTGATGGTC 384722 Query 34946 TTTCCCGTGA 34955 || || |||| Sbjct 384721 TTGCCAGTGA 384712 Score = 95.1 bits (104), Expect = 8e-15 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| ||||||| || ||||||||| ||||| ||||| || |||| |||| Sbjct 385129 AGGACTAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGAGTGCGACCATCC 385070 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| || ||||||||||| || || || || | || | |||||||| || Sbjct 385069 TCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGTTGATCCGGGGGAATGCCCTCCTTATCC 385010 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || ||| |||||| | || | ||| | ||| || |||| || |||||| Sbjct 385009 TGAATCTTTGACTTGACGTTGTCGATAGTGTCAGACGACTCAACCTCAAGAGTGATGGTC 384950 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || | ||||| || ||||| ||||| Sbjct 384949 TTGCCGGTCAAAGTCTTGACGAAGATTTGCAT 384918 >seq6 Length=2850886 Score = 122 bits (134), Expect = 6e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| ||||| | ||| ||||||||| ||||| ||||| ||| |||| |||| Sbjct 2704345 AGGACGAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCC 2704286 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| || ||||||||||| || || ||||| | || | ||||||||||| Sbjct 2704285 TCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCC 2704226 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | || | || | ||| || |||| ||| || ||| Sbjct 2704225 TGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTC 2704166 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || |||||||||||||| || ||||||||||| Sbjct 2704165 TTACCCGTGAGGGTCTTCACGAAGATCTGCAT 2704134 >seq2 Length=4113143 Score = 95.1 bits (104), Expect = 8e-15 Identities = 134/186 (72%), Gaps = 8/186 (4%) Strand=Plus/Plus Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847 ||||||| ||||| ||||| || ||| |||| |||| || || ||||| || ||||||| Sbjct 379809 CCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGA 379868 Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATG 34907 |||| || || ||||| | || | ||||||||||| | || || ||||| || Sbjct 379869 TCAGGCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTCGACTTGAC--AT- 379925 Query 34908 CTATCGAT----TCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTT 34963 | ||||| || || |||||| || | ||| |||||||| || || | ||||| Sbjct 379926 -TGTCGATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCAGTTAACGTCTTA 379984 Query 34964 ACAAAG 34969 |||||| Sbjct 379985 ACAAAG 379990 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325692613439093