Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarocladium_20oryzae_20[genbank_20GCA_5F001972265.1_202016-12-09] 47 sequences; 32,403,370 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq1 156 6e-32 seq9 134 2e-25 >seq1 Length=5810324 Score = 156 bits (172), Expect = 6e-32 Identities = 339/502 (68%), Gaps = 19/502 (4%) Strand=Plus/Plus Query 259682 CACAAGGAGGTCCTCGACGCTGCCATCTGCCACGGCCGAGACTTTGGCTACTCGTACTTT 259741 |||||||||| || ||| | || ||| ||| ||| || || |||| |||||| Sbjct 2735960 CACAAGGAGGAGCTGGACTCCGCGATCGTGTACGACCGTGATTTCAACTACCAATACTTT 2736019 Query 259742 GGTCTGGCGACCTTGCGCCGGTCCTACCTGACCAAAGTGCGCGATATTGTCGTCGAGCGG 259801 || | |||| || || || |||||| ||| | || | | || ||||| Sbjct 2736020 GGCTTCAAGACCCTGGAGCGATCATACCTGCTCAAGCTCAACGGCAAGATTGTTGAGCGT 2736079 Query 259802 CCCCAGTATATGCTCATGCGTGTCGCCCTTGGCCATTATGGGTTTGCCGACGTCGACAAT 259861 || ||| | ||| | ||||| ||||| | ||| | |||| | |||||| Sbjct 2736080 CCACAGCACATGATTATGCGCGTCGCTGTCGGCA--TCTGGGGT----------GACAAT 2736127 Query 259862 GCGCTGGAGCACGTGCTCGCCACCTACGAGGCCATGTCGCAGCA-GTTGTTCACCTCA-G 259919 | |||| ||| | | |||||| | ||||||| |||| ||| ||||| ||| | Sbjct 2736128 A---TTGAGCGCGTTATTGAGACCTACAACCTCATGTCG-AGCAAGTTTTTCAC-TCACG 2736182 Query 259920 CGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGT 259979 | | ||||||||||| ||||| || || || | | ||| ||||| |||||||| Sbjct 2736183 CCTCACCCACGCTCTTCAATGCTGGTACCCCTCAAGCTCAGCTATCGTCTTGCTTTCTTG 2736242 Query 259980 TGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCA 260039 | |||||||| | || || || ||||||||||||||||||||| ||||| | | Sbjct 2736243 TCGACATGAAAGATGACAGCATTGATGGCATCTATGACACGCTCAAGACTTGCGCTATGA 2736302 Query 260040 TCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCCT 260099 |||||||| ||| || ||||| || | | ||| | || || | ||| | | Sbjct 2736303 TCTCCAAGATGGCTGGTGGCATTGGCCTCAATGTTCACCGAATTCGGGCTACTGGCTCTT 2736362 Query 260100 ACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACG 260159 || | || |||||||||||| ||||| ||||||||||| ||||| || || || ||| Sbjct 2736363 ACATTGCCGGCACCAACGGCACCTCCAATGGCCTTGTGCCTATGCTCCGGGTCTTCAACA 2736422 Query 260160 ACACGGCGCGCTACGTCGACCA 260181 |||| || |||||||| ||||| Sbjct 2736423 ACACTGCCCGCTACGTTGACCA 2736444 >seq9 Length=1624432 Score = 134 bits (148), Expect = 2e-25 Identities = 213/300 (71%), Gaps = 13/300 (4%) Strand=Plus/Plus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| |||||||| || |||||||||||||| || ||||| |||||||| |||| | Sbjct 712315 GATCTGGCAAATGTAC-AAGAAGGCCGAGGCCTCTTTCTGGACTGCCGAGGAAATCGATC 712373 Query 1455835 TCGGCGCCGA----CACGGTCCACTGGGTGT--CGC-TGAGCGACGACGAGCGCCATTTC 1455887 || | || |||| ||||| ||| ||| ||| |||||| | ||| Sbjct 712374 TCTCCAAGGATCTTCACG----ACTGGAACAACCGCCTGAACGATGACGAGAAGTACTTC 712429 Query 1455888 ATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGC 1455947 ||| ||| || | || ||| ||||| ||| || |||||||| ||||||||||| Sbjct 712430 ATCTCTCACATCTTGGC-TTTCTTCGCTGCCTCTGACGGCATCGTCAACGAGAACCTGGT 712488 Query 1455948 CGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGAT 1456007 | ||||| | || || ||| | || ||||| || | || ||||| |||||||| Sbjct 712489 TGAGCGCTTCAGCGCCGAAGTGCAAGTCCCTGAGGCTCGCTGCTTCTACGGTTTCCAGAT 712548 Query 1456008 CGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGA 1456067 || || ||||| ||||| || || ||||| |||||||||||||| ||| ||||||| Sbjct 712549 TATGATGGAGAACATTCACTCCGAGACATACTCTCTCCTGATCGACACATACATCAAGGA 712608 Score = 104 bits (114), Expect = 3e-16 Identities = 176/250 (70%), Gaps = 4/250 (2%) Strand=Plus/Plus Query 1456532 GAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCGCTCATCGGC 1456591 |||||||| | ||| || ||||| ||| || | || || || ||| ||||| Sbjct 712986 GAGGCCGTGGTTTACGAAAAGGAGTTCCTCACTGATGCTCTTCCCTGTGCCCTCCTCGGC 713045 Query 1456592 ATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCGCCTGCTCGCGG 1456651 |||||||||||| |||||| ||||||||||| || ||||| |||||||| |||| | Sbjct 713046 ATGAACGCCACC-CTCATGCAGCAGTACATTGAGTTC-GTCGCTGACCGCCTCCTCGTCG 713103 Query 1456652 CGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGATGGAGTTGATC 1456711 | || ||| || ||||| ||| | ||||||| ||| | |||||| ||| Sbjct 713104 CTCTTGGCAACG-AGAAGGTGTACAACTCCACCAACCCTTTCGACTTCATGGAGAACATC 713162 Query 1456712 TCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGTGGC-GAGTACGCCAAGGCCGGC 1456770 || || | |||||||||||||| |||||| || || || || ||| ||||| || Sbjct 713163 TCCCTGGGTGGCAAGACCAACTTCTTCGAGAAGCGTGTCGCTGACTACCAGAAGGCTGGT 713222 Query 1456771 GTCACCGCCA 1456780 |||| |||| Sbjct 713223 GTCATGGCCA 713232 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177806666763614