Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarocladium_20oryzae_20[genbank_20GCA_5F001972265.1_202016-12-09] 47 sequences; 32,403,370 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq1 159 4e-34 seq9 93.3 5e-14 >seq1 Length=5810324 Score = 159 bits (176), Expect = 4e-34 Identities = 554/850 (65%), Gaps = 31/850 (4%) Strand=Plus/Minus Query 111251 TTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAA 111310 ||||||||||| ||| || | | | ||||| | || || || || | |||||| Sbjct 2736915 TTGCAAACAGCAACCTCGTCAGGAGCAGAATACTCGATGATCTCAGTGCAAAGGTTGGAG 2736856 Query 111311 CTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGC 111370 || || || || | ||||| ||||| ||||| |||||| || |||||||||||| Sbjct 2736855 CTGCGGATTGTACCAAGGTTCTTCTGGTTGCTCTTACGGTTGCAAGCGTCCTTGTAGAGC 2736796 Query 111371 ATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAA-CATCGGCGGC 111429 ||| | || | || ||||| ||||||| | || || | | ||||| | || | | | Sbjct 2736795 ATGAATGGATTACCAGTCTCAGTCTGTGCCTCAAGGATCGAGTACCAAAGCTTCTGAGCC 2736736 Query 111430 TGGTACAATG--GCGTTGGCCCGT-CCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAA 111486 | | ||| ||| | |||| | |||||| ||||||||| ||| | || ||||| Sbjct 2736735 TTG----ATGGTGCGCTTGCCCTTGCCCTCCCTCTCGTACTTCTCGTACAATGCCTCAAA 2736680 Query 111487 CTCCTCACCCACCGC-GTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATT 111545 |||||| ||| || ||||| || || || || | ||||| | || | ||| | Sbjct 2736679 TTCCTCA-CCATAGCAGTCGGCAAGGCCAGGGCACTCATTAGGACACATGAGTGTCCACT 2736621 Query 111546 GACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCC--ACAGGGATGAAAAGAG 111603 ||| | || || ||||||||||| || || ||||||| | || || |||| || Sbjct 2736620 CGCCATTCTTTTCGACACGCTTCATGAAGAGATCCGGAATCCAAAGAGCGAGGAAA--AG 2736563 Query 111604 ATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGAT 111663 ||| | ||| |||| || | || ||||| || | || |||||||| | || Sbjct 2736562 ATCACGGGCACGAACCTCCTCTTTGCCATGGTTCTTACGGAGATCGAGGAACTCAAAGAC 2736503 Query 111664 ATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACGC------CCAGC 111717 || | |||||| || ||||| || | |||| | || ||||| ||| | Sbjct 2736502 GTCTGAGTGCCAGGGTTCAAGGTAAATGGCGAAGGCGCC---AGGACGCTTATTGCCACC 2736446 Query 111718 TTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGA 111777 ||| | || ||||| || ||| ||| || || || ||||| || | || |||| || Sbjct 2736445 TTGGTCAACGTAGCGGGCAGTGTTGTTGAAGACCCGGAGCATAGGCACAAGGCCATTGGA 2736386 Query 111778 TTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCC 111837 || || || || ||| ||| | | || | | || | | | || Sbjct 2736385 GGTGCCGTTGGTGCCGGCAATGTAAGAGCCAGTAGCCCGAATTCGGTGAACATTGAGGCC 2736326 Query 111838 AATACCCCCAGCCCACTTTGAGAT--TTGCGCACACTCCGTAAGAGTTCCATAGATACCG 111895 ||| || |||||| ||| ||||| | ||||| | | | | || || ||||||| || Sbjct 2736325 AATGCCACCAGCCATCTTGGAGATCATAGCGCA-AGT-CTTGAGCGTGTCATAGATGCCA 2736268 Query 111896 TTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTA 111955 | || ||| || || || ||| ||| |||||| || | ||| | | || ||| Sbjct 2736267 TCAATGCTGTCATCTTTCATGTCGACAAGAAAGCAAGACGATAGCTGAGCTTGAGGGGTA 2736208 Query 111956 CCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG--GGACATCTTGTCGT 112013 |||||||||||||| || |||| |||||| ||| | | |||| ||||| || || Sbjct 2736207 CCAGCATTGAAGAGCGTGGGTGAGGCGTGAGTGA--AAAACTTGCTCGACATGAGGTTGT 2736150 Query 112014 ATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACA 112073 | ||||| | || ||||| | || || |||||||| ||||| ||||| | || Sbjct 2736149 AGGTCTCAATAACGCGCTCAATATTGTCACCCCAGATGCCGACAGCGACGCGCATAATCA 2736090 Query 112074 TGTACTGTGG 112083 ||| |||||| Sbjct 2736089 TGTGCTGTGG 2736080 >seq9 Length=1624432 Score = 93.3 bits (102), Expect = 5e-14 Identities = 147/208 (71%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 122658 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACC 122717 |||||| || ||| ||||||||||| || || ||||| || || ||||| ||||| Sbjct 712922 GGCAAAGTCGGTGTGAAGACCCTCATCACGAGAGATAAGCTCGTTGGAGAAAGTGAGACC 712863 Query 122718 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGAT 122777 |||||||| || |||||||| | ||| | || | ||| | ||| |||||| || Sbjct 712862 AGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAAGCGAAAGCACCGCTGAAGAAAAT 712803 Query 122778 ACCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAG-ACTTTGCATCAA 122836 |||||| ||| || || |||| ||||| | ||||||| ||| ||| || ||| Sbjct 712802 ACCCTCAACAGCAGCGAAGGCAACGAGGCGCTGACCGAAGGA-TGAGTTCTTGTCAGCAA 712744 Query 122837 ACCATTTCATTGCCCATTTCGCCTTCTT 122864 ||| || | ||||| | |||||||| Sbjct 712743 TCCACTTGAGAGCCCAGTCGGCCTTCTT 712716 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628031631031200