Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarocladium_20oryzae_20[genbank_20GCA_5F001972265.1_202016-12-09] 47 sequences; 32,403,370 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq1 224 1e-53 seq9 145 9e-30 seq3 105 8e-18 >seq1 Length=5810324 Score = 224 bits (248), Expect = 1e-53 Identities = 904/1397 (65%), Gaps = 39/1397 (3%) Strand=Plus/Plus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 |||||| ||||| | |||||||| || |||| || || || | ||||| || Sbjct 2736080 CCACAGCACATGATTATGCGCGTCGCTGTCGGCATCTGGGGTGACAATATTGAGCGCGTT 2736139 Query 104282 TTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACACCAACCCTCT 104339 | ||||| ||| || ||||| |||| | | ||| |||||| |||| || |||| Sbjct 2736140 ATTGAGACCTACAACCTCATGTCGAGCAAGTTTT--TCACTCACGCCTCACCCACGCTCT 2736197 Query 104340 TCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGG 104399 ||||||||||||| || | | || | || |||||| ||| ||| || || || | Sbjct 2736198 TCAATGCTGGTACCCCTCAAGCTCAGCTATCGTCTTGCTTTCTTGTCGACATGAAAGATG 2736257 Query 104400 ACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAA--ATCTCAAAGTGGGC 104457 || || | || ||||||| || || | | | | ||||| | ||||| ||| ||| Sbjct 2736258 ACAGCATTGATGGCATCTATGACACGCTCAAG-ACT-TGCGCTATGATCTCCAAGATGGC 2736315 Query 104458 TGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGAC 104517 ||| || ||||| | | | || | | || | | ||| ||| || || Sbjct 2736316 TGGTGGCATTGGCCTCAATGTTCACCGAATTCGGGCTACTGGCTCTTACATTGCCGGCAC 2736375 Query 104518 AAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTA 104577 || || || |||| || | || ||||| || || || ||| ||| || ||||| Sbjct 2736376 CAACGGCACCTCCAATGGCCTTGTGCCTATGCTCCGGGTCTTCAACAACACTGCCCGCTA 2736435 Query 104578 TGTAAATCAAGCTGG------GCGTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCATG 104631 || | |||| ||| ||||| || | |||| | || ||||| || || Sbjct 2736436 CGTTGACCAAGGTGGCAATAAGCGTCCT---GGCGCCTTCGCCATTTACCTTGAACCCTG 2736492 Query 104632 GCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCG 104691 |||| | || || | |||||||| || | ||| ||||| || | ||||||| || Sbjct 2736493 GCACTCAGACGTCTTTGAGTTCCTCGATCTCCGTAAGAACCATGGCAAAGAGGAGGTTCG 2736552 Query 104692 GTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGA 104751 ||| ||||| ||| |||||| |||||||| ||||||||||||||| | || || | Sbjct 2736553 TGCCCGTGATCTTTTCCTCGCTCTTTGGATTCCGGATCTCTTCATGAAGCGTGTCGAAAA 2736612 Query 104752 GAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGA-TGCCGTGG 104810 || |||| | ||| | ||| | ||||| | || ||||| || |||| ||| | | Sbjct 2736613 GAATGGCGAGTGGACACTCATGTGTCCTAATGAGTGCCCTGGCCTTGCCGACTGCTAT-G 2736671 Query 104811 GTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTC--GGGCGACTGCGAC 104868 ||||||| ||||| || | ||| |||||||| || | ||| | |||| | || || Sbjct 2736672 GTGAGGAATTTGAGGCATTGTACGAGAAGTACGA-GAGGGAGGGCAAGGGCAAGCGC-AC 2736729 Query 104869 GGTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACAC 104927 | | || | || | | ||| | | || || || | || || |||||||||| | Sbjct 2736730 CAT-CAAGGCTCAGAAGCTTTGGTACTCGATCCTTGAGGCACAGACTGAGACTGGTAATC 2736788 Query 104928 CATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGA 104987 ||| |||||| ||||| ||||| || |||| ||||| || || ||||| | ||| | Sbjct 2736789 CATTCATGCTCTACAAGGACGCTTGCAACCGTAAGAGCAACCAGAAGAACCTTGGTACAA 2736848 Query 104988 TCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTG 105047 || || ||||| || || || || ||| | || | | | | || ||| |||| Sbjct 2736849 TCCGCAGCTCCAACCTTTGCACTGAGATCATCGAGTATTCTGCTCCTGACGAGGTTGCTG 2736908 Query 105048 TGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGA-TCCAGAGACAAAGACATTT 105106 | || ||||| || || | ||||| | | | | | | | || | | || Sbjct 2736909 TTTGCAACCTTGCTTCTCTGGCTCTGTCTGCCTTTATTAACTACGATGATGCATGC-TTC 2736967 Query 105107 GATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATT 105166 || | | || || ||||||||||| || ||| || || |||| |||| Sbjct 2736968 GACTTCAAGAAGCTGCACGAAGTTACCCAAGTTGTGGTTCGCAATCTCAACAAGATTATC 2737027 Query 105167 GATAGAAATTTTTACCCCGT---TGAGACTGCTCGTAAATCTAATATGAGACACCGTCCA 105223 ||| ||| || || || |||| || ||||| || ||| | ||||| || Sbjct 2737028 GATGTAAACCACTATCCTGTCCCTGAG---GCACGTAACAGCAACATGCGTCACCGACCC 2737084 Query 105224 ATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATT-CTTTGTCGCCACGCATTTGA 105282 || ||| |||||||||| || ||||| || | ||| || || || || | | || || Sbjct 2737085 ATCGGTGTCGGTGTTCAAGGCCTCGCTGACGCCTTCCTTGCTCTG-CGACTGCCTTTCGA 2737143 Query 105283 TTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCT 105342 || || || || |||| || || |||||||| || || ||||| ||| | Sbjct 2737144 GTCGCCTGAGGCTCGTGAGCTCAACAAGCAGATCTTTGAGACTATTTACCACGCTGCTTT 2737203 Query 105343 TGAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCC 105402 || | ||| | || ||||||| || ||||| | || ||||||| || Sbjct 2737204 AACTGCATCTGTTGAGATCGCCAAGGTTGAGGGCCCATACTCGTCGTTCAAGGGTTCCCC 2737263 Query 105403 AGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGC-TTCACTACG 105461 || || |||| | || |||| ||||||| |||| || | || ||| | | | Sbjct 2737264 TGCCTCCGAAGGTATTCTGCAATACGATATGT-GGAACGTCAAGCCCAGCGACCTGTGGG 2737322 Query 105462 ACTGGGA-AGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATG 105520 ||||||| ||| |||||||| | ||||||||| | || |||| |||||||| || | Sbjct 2737323 ACTGGGACAGC-CTCAAGGAGCAAATCAAGGAGCATGGCATTCGCAACAGTCTGCTGCTT 2737381 Query 105521 GCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCC 105580 || || ||||| || ||| || |||| || | || || || || |||||||| ||| Sbjct 2737382 GCCCCCATGCCCACTGCCAGTACATCACAGATTCTTGGCAACAACGAGTGCTTTGAGCCC 2737441 Query 105581 TACACGACGAACATCTA 105597 || || |||| ||||| Sbjct 2737442 TATACTTCGAATATCTA 2737458 >seq9 Length=1624432 Score = 145 bits (160), Expect = 9e-30 Identities = 168/224 (75%), Gaps = 2/224 (1%) Strand=Plus/Plus Query 94733 CAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACAAAGTCG 94791 ||||||| || |||| ||||| || || |||||| | |||||| ||| | |||| | Sbjct 712699 CAGTTCCCTGCATTCGCAAGAAGGCCGACTGGGCTCTCAAGTGGATTGCTGACAAGAACT 712758 Query 94792 CGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGT 94851 | | |||| | | |||| ||| | || || || |||||||||||| |||||| ||| Sbjct 712759 CAT-CCTTCGGTCAGCGCCTCGTTGCCTTCGCTGCTGTTGAGGGTATTTTCTTCAGCGGT 712817 Query 94852 TCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCC 94911 | ||| | || | |||||||||||||| || |||||||| |||||| |||||| Sbjct 712818 GCTTTCGCTTCCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCTGGTCTCACTTTCTCC 712877 Query 94912 AACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 |||||||||||||||||||| ||||| || ||| || ||||| Sbjct 712878 AACGAGCTTATCTCTCGTGATGAGGGTCTTCACACCGACTTTGC 712921 >seq3 Length=3685789 Score = 105 bits (116), Expect = 8e-18 Identities = 187/268 (70%), Gaps = 10/268 (4%) Strand=Plus/Minus Query 9704 GCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAGA 9763 ||||||||||| || ||||||| |||||| || || | ||| | | |||||||| Sbjct 1652194 GCATCAATCTCGTCGATGAAGATGATGCACGGGGCGTTCTTGCGGCCTTCGGCAAAGAGA 1652135 Query 9764 TCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTG--CGGCGGAAC 9821 || || ||||| || |||||||| || ||||||||||| || | | | || || Sbjct 1652134 TCGCGCACACGGGAGGGTCCCACACCGACGAACATCTCCACGAACTCAGATCCGCTGACG 1652075 Query 9822 ATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCG 9881 | || |||||| || |||||||| ||| |||| ||||| || || ||||| | Sbjct 1652074 CT--GAAGAAGGGAACGCCTGATTCACCGGCAGTGGCCTTTGCGAGCAGTGTTTTACCGG 1652017 Query 9882 TACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCA--CTTC-CAAAGT 9938 | || || || ||||| | ||||| ||||| || || |||||| |||| | || | Sbjct 1652016 TGCCAGGTGGGCCAGCGAGAATAGCACCACGTGGGATTTTTGCGCCAAGCTTCTCGAACT 1651957 Query 9939 ATCTCTCAGGTTGCTTAAGAAAATCCAC 9966 ||||||| ||||| || || | ||| Sbjct 1651956 ---TCTCAGGCTGCTTCAGGAAGTTCAC 1651932 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583260457334280