Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarocladium_20oryzae_20[genbank_20GCA_5F001972265.1_202016-12-09] 47 sequences; 32,403,370 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq8 127 6e-24 seq6 116 1e-20 >seq8 Length=2135075 Score = 127 bits (140), Expect = 6e-24 Identities = 169/235 (72%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| ||||||||| || | | || || || |||||||||||||| || || || || | Sbjct 385152 TTTGCATACCACCGCGGAGACGAAGGACTAGGTGAAGAGTAGACTCCTTCTGGATGTTGT 385093 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || | || || ||||| ||||| || || ||||| ||||| || || || |||| Sbjct 385092 AGTCGCTCAGAGTGCGACCATCCTCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGTTGAT 385033 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | || ||||| || || ||||||||||| || | || || || || || | ||||| | Sbjct 385032 CCGGGGGAATGCCCTCCTTATCCTGAATCTTTGACTTGACGTTGTCGATAGTGTCAGACG 384973 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||| ||||| || | ||||| ||||| | || || || || || ||||| Sbjct 384972 ACTCAACCTCAAGAGTGATGGTCTTGCCGGTCAAAGTCTTGACGAAGATTTGCAT 384918 Score = 109 bits (120), Expect = 2e-18 Identities = 165/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||| |||||||| | | || || | || |||||| ||| || || || || || || Sbjct 385376 CATGCCACCACGAAGACGGAGCACCAAGTGGAGAGTACTCTCCTTCTGGATGTTGTAGTC 385317 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 | || || ||||| ||||| || || ||||| || || || || || ||||| || Sbjct 385316 GCTCAGAGTGCGGCCATCCTCAAGCTGCTTACCAGCGAAAATCAGGCGCTGTTGATCCGG 385257 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCT-TTTACATTATCAATCGAATCAGATGGTT 140685 ||||| || || ||||||||||| || ||| || || || || || | ||||||| | Sbjct 385256 GGGAATACCCTCCTTATCCTGAATCTT-GCTCTTCACGTTGTCGATGGTGTCAGATGACT 385198 Query 140686 CAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 |||| || || || | |||||| ||||| || || || || || || ||||| Sbjct 385197 CAACCTCGAGAGTGATTGTCTTGCCGGTCAGAGTCTTGACGAAGATTTGCAT 385146 >seq6 Length=2850886 Score = 116 bits (128), Expect = 1e-20 Identities = 112/142 (79%), Gaps = 4/142 (3%) Strand=Plus/Plus Query 377458 CGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGCAAAGTGGAAAGTATTA 377517 || ||||||||| | ||||| ||| || || | ||||||||||||||||||||| || Sbjct 930330 CGCGGCACACCAAGGGTAACGTTC---TTGGACGAAACACCAGCAAAGTGGAAAGTGTTC 930386 Query 377518 AGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAATAACGCCAACCATTTCT 377577 || || | || || | |||||||||||| ||||| || |||| |||||||||||||| Sbjct 930387 AGTGTCATCTGTGTGGCGGGCTCACCAATGGACTGGGCAGCAAGGACGCCAACCATTTCG 930446 Query 377578 CCAGGATTGACAATAGC-CTCT 377598 || || ||||| | ||| |||| Sbjct 930447 CCGGGGTTGACGAAAGCTCTCT 930468 Score = 93.3 bits (102), Expect = 1e-13 Identities = 171/247 (69%), Gaps = 8/247 (3%) Strand=Plus/Plus Query 378231 AATATAACCAGTTT-GACTAGTTTTAACTGCAGTATCAATTAAACCAACACGACCACCCA 378289 ||| || ||||||| | || || || || || |||||||| | ||| |||||||| ||| Sbjct 931121 AATGTAGCCAGTTTCGGCT-GTCTTGACAGCGGTATCAATGAGACCTTCACGACCAGCCA 931179 Query 378290 TTGCATGGAAGAATAATTCAGTAGGAGTAAGTCCACCAATAAATGAACTCTCAATAAATC 378349 | || ||||| || ||||||||||| || || |||| | | || |||||| || | Sbjct 931180 TGGCGTGGAAAAAGAATTCAGTAGGCGTCAGGCCACGCAGGTAGGAGTTCTCAACGAAGC 931239 Query 378350 CTCTTGCGCCTGGCGAATCATCATATTTTGTATAATGAGGTAATGTACGATTCTCAAACC 378409 | | || | || || | ||| | || || | ||||| | || || | || || | Sbjct 931240 CACGAGCTTCAGGAGAGTAATCGTCCTTGGTGAAGTGAGGAAGAGTGCGGTACTTGAAAC 931299 Query 378410 CATATGGAATTCGTTTTCCATCAACATTCTGTTGAC---CAAGTGCAGAAACCATTTGAG 378466 | | ||||| || ||||| |||||| |||| |||| |||| |||| ||| |||| Sbjct 931300 CGAACGGAATGCGCTTTCCTTCAACAATCTGCTGACCGACAAGGGCAG---TCATCTGAG 931356 Query 378467 CAATATT 378473 ||||| Sbjct 931357 AGATATT 931363 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515253487532741