Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarocladium_20oryzae_20[genbank_20GCA_5F001972265.1_202016-12-09] 47 sequences; 32,403,370 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq1 228 9e-55 seq4 96.9 4e-15 >seq1 Length=5810324 Score = 228 bits (252), Expect = 9e-55 Identities = 505/750 (67%), Gaps = 12/750 (2%) Strand=Plus/Plus Query 53195 ATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACGAC 53254 ||||||||||| | || ||| |||||| | ||| || |||||| ||| || Sbjct 2736095 ATGCGCGTCGCTGTCGGCATCTGGGGTGACAATATTGAGCGCGTTATTGAGACCTACAAC 2736154 Query 53255 TTAATG---AGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACG 53311 | ||| ||| |||| || || |||||| | || || || ||||| |||||||| Sbjct 2736155 CTCATGTCGAGC---AAGTTTTTCACTCACGCCTCACCCACGCTCTTCAATGCTGGTACC 2736211 Query 53312 AATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGC 53371 ||| ||||| | ||| ||||| || || | ||||| |||||| || || ||| Sbjct 2736212 CCTCAAGCTCAGCTATCGTCTTGCTTTCTTGTCGACATGAAAGATGACAGCATTGATGGC 2736271 Query 53372 ATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATC 53431 ||||| || ||||||||| || || ||||||||| | | ||||| || || || Sbjct 2736272 ATCTATGACACGCTCAAGACTTGCGCTATGATCTCCAAGATGGCTGGTGGCATTGGCCTC 2736331 Query 53432 CACTGCTCGAACG--TCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCG 53489 | || || | || | || || | ||| | || || || |||||| | || Sbjct 2736332 AA-TGTTC-ACCGAATTCGGGCTACTGGCTCTTACATTGCCGGCACCAACGGCACCTCCA 2736389 Query 53490 ATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTG 53549 |||| | |||||||||||||| |||||||||||||| ||||| ||||| |||| |||| Sbjct 2736390 ATGGCCTTGTGCCTATGCTCCGGGTCTTCAACAACACTGCCCGCTACGTTGACCAAGGTG 2736449 Query 53550 GTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGG 53609 | ||||| || | |||||||| ||||| || || |||||| | ||| | | | Sbjct 2736450 GCAATAAGCGTCCTGGCGCCTTCGCCATTTACCTTGAACCCTGGCACTCAGACGTCTTTG 2736509 Query 53610 AGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTA 53669 |||| ||||| || ||| ||| || || | || ||| | || |||||| || || Sbjct 2736510 AGTTCCTCGATCTCCGTAAGAACCATGGCAAAGAGGAGGTTCGTGCCCGTGATCTTTTCC 2736569 Query 53670 CAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACC 53729 ||||| ||||||||||| ||||||||| | || || ||| | | |||||| | Sbjct 2736570 TCGCTCTTTGGATTCCGGATCTCTTCATGAAGCGTGTCGAAAAGAATGGCGAGTGGACAC 2736629 Query 53730 TGATGTGCCCGAACGAGTGCCCCGGCC-TCCAGGGTGTCTACGGTGAGGAGTTTAACGAG 53788 | ||||| || || |||||||| |||| | | | || ||| |||||||| ||| | | Sbjct 2736630 TCATGTGTCCTAATGAGTGCCCTGGCCTTGCCGACTG-CTATGGTGAGGAATTTGAGGCA 2736688 Query 53789 ATGTATCGGACGTACGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTA 53848 |||| || ||||| ||||| |||| | ||||||| | || | Sbjct 2736689 TTGTACGAGAAGTACGAGAGGGAGGGCAAGGGCAAGCGCACCATCAAGGCTCAGAAGCTT 2736748 Query 53849 TGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGAT 53908 ||| | | ||||| || ||| ||||| || | || | |||| ||||||||| Sbjct 2736749 TGGTACTCGATCCTTGAGGCACAGACTGAGACTGGTAATCCATTCATGCTCTACAAGGAC 2736808 Query 53909 TCGGTCAACGAGAAGAGCAACCAGAAGAAC 53938 | |||| |||||||||||||||||| Sbjct 2736809 GCTTGCAACCGTAAGAGCAACCAGAAGAAC 2736838 Score = 84.2 bits (92), Expect = 2e-11 Identities = 103/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 55787 GCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCT 55846 || || |||||||| | |||||||||||| ||||| || |||||| |||| || | || Sbjct 2737670 GCAGACCGTGGTGCTTTCATCGACCAGTCTCAGTCGCTCAACATCCACATGAAGGACCCC 2737729 Query 55847 TCACTGGCCAAGTTGAGCTCGATGCACTTTTAC-GGGTGGAAGAAGGGACTCAAGACGGG 55905 ||| |||| | | | ||||| ||| || || |||||| ||||||||||| || Sbjct 2737730 AGCATGGGCAAGATCACCAGCATGCA-TTTCACAGGATGGAAGCTTGGACTCAAGACTGG 2737788 Query 55906 TATGTACTATCTGCGGAC 55923 |||||||| ||||| || Sbjct 2737789 CATGTACTACCTGCGCAC 2737806 >seq4 Length=3262506 Score = 96.9 bits (106), Expect = 4e-15 Identities = 185/271 (68%), Gaps = 4/271 (1%) Strand=Plus/Minus Query 117302 CGAGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAAT 117361 || ||| |||||||||||| ||| |||||||| |||| || |||||| | |||||| Sbjct 1738361 CGCGTGTAAATGTAACGAGGGCTGGCAGCATCGCTGCCTCCTTGAAGACGAGAACCGAAC 1738302 Query 117362 TGTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTG 117421 ||||| ||||| | | ||| | |||||| | || ||| |||| ||||| | | Sbjct 1738301 ATGCCACTGGGCTCAAGGCAGTTGATGTTGTTCGAACCGACATAGTTCTGAGCAAGGCCA 1738242 Query 117422 ACAATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAG 117481 | ||| || || || | | ||||| ||||| || ||||| | | | ||||| Sbjct 1738241 ATAATGGTCTGCTGCAGTGACACATCACCGTGGTGGTATGCCGTTTCGCCGGAGACGTAA 1738182 Query 117482 CCCGCCAGCTGAGCCACCTTCATGTC--TGACGTCAGGTTCTTCTTGAGGCAGGCATAAA 117539 ||||| || | | |||||| |||| |||| |||||| |||| |||| | Sbjct 1738181 CCCGCGAGGTCTACAACCTTCTTGTCTTTGAC--CAGGTTACGTTTGAAAACACCATACA 1738124 Query 117540 TCACCTTGCGCTGACTTGGCTTCAGACCATC 117570 | || ||||| || | |||||||| ||||| Sbjct 1738123 TGACTTTGCGTTGGCCAGGCTTCAGGCCATC 1738093 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547215678510600