Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarocladium_20oryzae_20[genbank_20GCA_5F001972265.1_202016-12-09] 47 sequences; 32,403,370 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq8 111 1e-19 >seq8 Length=2135075 Score = 111 bits (122), Expect = 1e-19 Identities = 136/186 (73%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 27012 ACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAA 27071 || |||||| | || |||||||| || ||| | |||||| | || || | ||||| | Sbjct 384714 ACTGGCAAGACCATCACTCTTGAGGTCGAATCCTCCGACACCATCGACAACGTCAAGTCA 384773 Query 27072 AAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAA 27131 || ||||| ||||| || ||||| || || ||||||||||| | || | ||| ||||| Sbjct 384774 AAGATTCAGGACAAGGAGGGCATTCCCCCGGATCAACAGCGCCTGATCTTCGCTGGCAAG 384833 Query 27132 CAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACAT 27191 || | || || || ||| ||||||| |||||||| || ||||| || ||| | || Sbjct 384834 CAGCTTGAGGATGGTCGCACCCTTTCCGACTACAACATCCAGAAGGAATCTACCCTCCAC 384893 Query 27192 TTGGTT 27197 ||||| Sbjct 384894 CTGGTT 384899 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || ||| ||||||||||| | || |||||||| || || |||| Sbjct 384918 ATGCAAATCTTCGTCAAGACTTTGACCGGCAAGACCATCACTCTTGAGGTTGAGTCGTCT 384977 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | ||||| ||| ||||| || || || ||||| || || |||||| Sbjct 384978 GACACTATCGACAACGTCAAGTCAAAGATTCAGGATAAGGAGGGCATTCCCCCGGATCAA 385037 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | ||| ||||| || | || || || || | ||| |||||| Sbjct 385038 CAGCGCCTGATCTTCGCTGGCAAGCAGCTTGAGGATGGTCGCACTCTGAGCGACTACAAC 385097 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||| || | || | || | ||| | || ||||| || Sbjct 385098 ATCCAGAAGGAGTCTACTCTTCACCTAGTCCTTCGTCTCCGCGGTGGTAT 385147 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| || || || ||||||||| | || || || || || || | Sbjct 385373 CATGCAGATCTTTGTCAAGACGCTCACCGGCAAGACCATCACCCTGGAGGTCGAGTCCAG 385432 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||| | ||||| | || || || || || ||||| || || || || || ||||| Sbjct 385433 CGACACCATTGACAATGTGAAGAGCAAGATCCAGGACAAGGAGGGTATTCCCCCGGATCA 385492 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||| | || | ||||||||| || ||||| || || || | ||| || || Sbjct 385493 ACAGCGCCTGATCTTCGCCGGCAAGCAGTTGGAGGATGGTCGCACTCTGAGCGACTATAA 385552 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 ||| || |||||| || | || ||||| | ||| | || |||||| Sbjct 385553 CATCCAGAAGGAGAGTACTCTCCACTTGGTGCTCCGTCTTCGTGGTGGC 385601 Score = 82.4 bits (90), Expect = 7e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || ||||||||||||||| | || ||||| || || || | || Sbjct 385146 ATGCAAATCTTCGTCAAGACTCTGACCGGCAAGACAATCACTCTCGAGGTTGAGTCATCT 385205 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || || ||||| || || || || || || || |||||| Sbjct 385206 GACACCATCGACAACGTGAAGAGCAAGATTCAGGATAAGGAGGGTATTCCCCCGGATCAA 385265 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | ||| || || || | || || | || | ||| |||||| Sbjct 385266 CAGCGCCTGATTTTCGCTGGTAAGCAGCTTGAGGATGGCCGCACTCTGAGCGACTACAAC 385325 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||| || | || ||||| | ||| | || |||||||| Sbjct 385326 ATCCAGAAGGAGAGTACTCTCCACTTGGTGCTCCGTCTTCGTGGTGGCAT 385375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434918144485440