Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarocladium_20oryzae_20[genbank_20GCA_5F001972265.1_202016-12-09] 47 sequences; 32,403,370 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq8 165 8e-36 seq6 152 5e-32 seq2 127 2e-24 >seq8 Length=2135075 Score = 165 bits (182), Expect = 8e-36 Identities = 176/230 (77%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | ||||| || || || ||||||||||| |||||||||||| Sbjct 385601 GCCACCACGAAGACGGAGCACCAAGTGGAGAGTACTCTCCTTCTGGATGTTATAGTCGCT 385542 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || ||||| | || || | ||||||||||||||| |||||||||||||| |||| ||| Sbjct 385541 CAGAGTGCGACCATCCTCCAACTGCTTGCCGGCGAAGATCAGGCGCTGTTGATCCGGGGG 385482 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 || | |||||||||| ||| || |||| || | | | |||||||| ||||| | Sbjct 385481 AATACCCTCCTTGTCCTGGATCTTGCTCTTC-ACATTGTCAATGGTGTCGCTGGACTCGA 385423 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||||| || || || || || || |||||||| || || ||||||||| Sbjct 385422 CCTCCAGGGTGATGGTCTTGCCGGTGAGCGTCTTGACAAAGATCTGCATG 385373 Score = 138 bits (152), Expect = 1e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| ||||| | || || || || || ||||||||| ||||| |||||| Sbjct 385144 CCACCGCGGAGACGAAGGACTAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTC 385085 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| | || || ||||||||||| ||||| |||||||||||||| |||| |||| Sbjct 385084 AGAGTGCGACCATCCTCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGTTGATCCGGGGGA 385025 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || |||||| ||| ||| | |||| | ||| | | | |||||| |||||| || Sbjct 385024 ATGCCCTCCTTATCC-TGAATCTTTGACTTGACGTTGTCGATAGTGTCAGACGACTCAAC 384966 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | || || || || || |||| ||||| ||||| || ||||| Sbjct 384965 CTCAAGAGTGATGGTCTTGCCGGTCAAAGTCTTGACGAAGATTTGCAT 384918 Score = 131 bits (144), Expect = 2e-25 Identities = 168/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | ||||| || || || ||||||||||| ||||| |||||| Sbjct 385373 GCCACCACGAAGACGGAGCACCAAGTGGAGAGTACTCTCCTTCTGGATGTTGTAGTCGCT 385314 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || ||||| | || || |||||||| || ||||| |||||||||||||| |||| ||| Sbjct 385313 CAGAGTGCGGCCATCCTCAAGCTGCTTACCAGCGAAAATCAGGCGCTGTTGATCCGGGGG 385254 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 || | |||||| ||| || || |||| ||| | | | ||||| ||||| | Sbjct 385253 AATACCCTCCTTATCCTGAATCTTGCTCTTC-ACGTTGTCGATGGTGTCAGATGACTCAA 385195 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| | || || || || || ||||| ||||| ||||| || ||||| Sbjct 385194 CCTCGAGAGTGATTGTCTTGCCGGTCAGAGTCTTGACGAAGATTTGCAT 385146 Score = 125 bits (138), Expect = 7e-24 Identities = 116/146 (79%), Gaps = 1/146 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| || || || | ||||| || || || |||||||| ||||| |||||||| Sbjct 384916 CCGCCACGGAGGCGGAGAACCAGGTGGAGGGTAGATTCCTTCTGGATGTTGTAGTCGGAA 384857 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || || ||||||||||| ||||| |||||||||||||| |||| |||| Sbjct 384856 AGGGTGCGACCATCCTCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGTTGATCCGGGGGA 384797 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTG 41781 | || |||||||||| ||| | |||| Sbjct 384796 ATGCCCTCCTTGTCC-TGAATCTTTG 384772 >seq6 Length=2850886 Score = 152 bits (168), Expect = 5e-32 Identities = 153/196 (78%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730 ||||||||| ||||| |||||| |||||||| | || || ||||||||||| ||||| Sbjct 2704325 CTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAA 2704266 Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGA 41790 ||||||||||||||||||| ||||| || |||||||||| ||| || ||| ||| Sbjct 2704265 GATCAGGCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTT-GACGT 2704207 Query 41791 CGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTA 41849 | | | |||||| ||||||||||| | || || || |||||||| || ||||| | Sbjct 2704206 TGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTACCCGTGAGGGTCTTCA 2704147 Query 41850 CGAAAATCTGCATGTT 41865 |||| |||||||| || Sbjct 2704146 CGAAGATCTGCATCTT 2704131 >seq2 Length=4113143 Score = 127 bits (140), Expect = 2e-24 Identities = 144/190 (76%), Gaps = 6/190 (3%) Strand=Plus/Plus Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732 ||||||| ||||| ||||||||||||||||| | || || ||||||||||| ||||| | Sbjct 379809 CCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGA 379868 Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGA 41790 |||||||||||||||||| ||||| || |||||||||| ||| || ||| || | Sbjct 379869 TCAGGCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGT 379928 Query 41791 CGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850 || | ||||| ||||| ||||| | || || || || || || | |||||| || Sbjct 379929 CG--ATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCAGTTAACGTCTTAAC 379986 Query 41851 GAAAATCTGC 41860 ||| |||| Sbjct 379987 --AAAGCTGC 379994 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462303728396400