Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scedosporium_20apiospermum_20[genbank_20GCA_5F000732125.1_202014-07- 21] 176 sequences; 43,437,139 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq165 123 3e-23 seq121 111 2e-19 seq110 82.4 9e-11 >seq165 Length=1469810 Score = 123 bits (136), Expect = 3e-23 Identities = 145/196 (74%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| |||| || || || |||| || |||||||| || ||||| Sbjct 93449 CTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 93508 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || ||||| ||||||| || | || |||||||||| ||| || |||| | Sbjct 93509 GATCAGGCGCTGTTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATT 93568 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | |||||| || || || |||| |||||||| ||||||||||| ||||| || Sbjct 93569 GTCGATCGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTTAGGGTCTTGAC 93628 Query 43172 AAAGATTTGCATTTTT 43187 ||||||||||| ||| Sbjct 93629 GAAGATTTGCATGTTT 93644 >seq121 Length=2448542 Score = 111 bits (122), Expect = 2e-19 Identities = 142/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || ||||||||||||| ||||| || |||| || |||||||| || || || Sbjct 310960 CTCCTTCTGGATATTGTAATCAGAAAGAGTGCGACCGTCCTCAAGCTGCTTGCCGGCAAA 310901 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110 ||||| |||||||| |||| || | | |||||||||| ||| | || | || | Sbjct 310900 AATGAGACGCTGCTGATCGGGGGGAATTCCCTCCTTGTCC-TGAATCTTCGACTTCACAT 310842 Query 43111 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | || ||| || || || || | ||| ||||||||||| || || ||||| | Sbjct 310841 TGTCGATGGTATCGGAAGACTCAACTTCAAGCGTAATGGTTTTGCCGGTAAGGGTCTTGA 310782 Query 43171 CAAAGATTTGCAT 43183 ||||||| ||||| Sbjct 310781 CAAAGATCTGCAT 310769 Score = 98.7 bits (108), Expect = 1e-15 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| ||||| |||||||||| || || || | || || || ||||||||||| || Sbjct 310732 CTCCTTCTGAATGTTGTAATCAGAAAGGGTGCGGCCATCTTCCAGTTGCTTACCAGCAAA 310673 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || || |||||||||| || | || |||||| ||| ||| | || | | | ||| Sbjct 310672 GATAAGACGTTGCTGGTCGGGAGGGATGCCCTCCTTATCC-TGAATCTTGGACTTAACGT 310614 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | ||||| ||||| || |||| || || || ||||| || || ||||| | Sbjct 310613 TGTCGATGGTGTCCGATGATTCAACTTCGAGGGTAATCGTCTTGCCAGTAAGAGTCTTCA 310554 Query 43171 CAAAGATTTGCAT 43183 | || || ||||| Sbjct 310553 CGAAAATCTGCAT 310541 Score = 95.1 bits (104), Expect = 1e-14 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||| |||||||||||||||| || || || |||| || |||||||| |||||||| Sbjct 310193 TCCTTCTGAATATTGTAATCAGAAAGGGTTCGGCCGTCCTCAAGCTGCTTTCCAGCGAAA 310134 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTT 43099 || || ||||| ||||||| || | || |||||||||| ||| || Sbjct 310133 ATCAGGCGCTGTTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTT 310087 >seq110 Length=3171699 Score = 82.4 bits (90), Expect = 9e-11 Identities = 129/182 (71%), Gaps = 2/182 (1%) Strand=Plus/Minus Query 42994 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 43053 |||| |||||||||||||||| || || || | || || |||||||| || ||||| | Sbjct 54590 CCTTCTGAATATTGTAATCAGAAAGGGTGCGGCCATCCTCGAGCTGCTTTCCGGCGAAAA 54531 Query 43054 TGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTC 43112 | || ||||| || |||| || | | |||||||||| ||| | || | || | | Sbjct 54530 TAAGACGCTGTTGATCGGGAGGGATTCCCTCCTTGTCC-TGAATCTTGGACTTCACATTG 54472 Query 43113 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172 | | |||||| || || || || | |||||||| || ||||| || ||||| || Sbjct 54471 TCGATCGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTACCCGTGAGGGTCTTGACG 54412 Query 43173 AA 43174 || Sbjct 54411 AA 54410 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571816342001280