Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scedosporium_20apiospermum_20[genbank_20GCA_5F000732125.1_202014-07- 21] 176 sequences; 43,437,139 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq121 143 6e-29 seq110 111 4e-19 >seq121 Length=2448542 Score = 143 bits (158), Expect = 6e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || ||||| | || || || ||||| ||||| || ||||| ||||| | |||||| Sbjct 310980 AGGACGAGATGGAGCGTGGACTCCTTCTGGATATTGTAATCAGAAAGAGTGCGACCGTCC 310921 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || || || || |||||||| || | ||| ||||| || || ||||| || || ||| Sbjct 310920 TCAAGCTGCTTGCCGGCAAAAATGAGACGCTGCTGATCGGGGGGAATTCCCTCCTTGTCC 310861 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 |||||||| | || ||||| || | ||||||| || || || || || ||||| || Sbjct 310860 TGAATCTTCGACTTCACATTGTCGATGGTATCGGAAGACTCAACTTCAAGCGTAATGGTT 310801 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || ||||| || || ||||| |||||||| Sbjct 310800 TTGCCGGTAAGGGTCTTGACAAAGATCTGCAT 310769 Score = 122 bits (134), Expect = 2e-22 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || |||||||| || || ||||| || || | || ||||| ||||| || ||| Sbjct 310737 GTGGACTCCTTCTGAATGTTGTAATCAGAAAGGGTGCGGCCATCTTCCAGTTGCTTACCA 310678 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || || | || || || ||||| || || || |||||||||||||| | || Sbjct 310677 GCAAAGATAAGACGTTGCTGGTCGGGAGGGATGCCCTCCTTATCCTGAATCTTGGACTTA 310618 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | ||| || | ||| || || || ||||| ||||| |||||||| || Sbjct 310617 ACGTTGTCGATGGTGTCCGATGATTCAACTTCGAGGGTAATCGTCTTGCCAGTAAGAGTC 310558 Query 104543 TTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 310557 TTCACGAAAATCTGCAT 310541 Score = 111 bits (122), Expect = 4e-19 Identities = 133/181 (73%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||| ||||||||||| || ||||| || |||| ||||| || || || |||||| Sbjct 310199 GTGGATTCCTTCTGAATATTGTAATCAGAAAGGGTTCGGCCGTCCTCAAGCTGCTTTCCA 310140 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || ||||| || | |||||| || || || || || || || ||||| ||||| | || Sbjct 310139 GCGAAAATCAGGCGCTGTTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTCGACTTG 310080 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | |||||| | || ||||| || || || ||||| || || | | || Sbjct 310079 ACATTGTCGATGGTATCAGAGGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGACTATT 310020 Query 104543 T 104543 | Sbjct 310019 T 310019 >seq110 Length=3171699 Score = 111 bits (122), Expect = 4e-19 Identities = 134/180 (74%), Gaps = 2/180 (1%) Strand=Plus/Minus Query 104372 TTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATT 104431 ||||||||||| || ||||| || || | || || || || || ||||| || ||||| Sbjct 54588 TTCTGAATATTGTAATCAGAAAGGGTGCGGCCATCCTCGAGCTGCTTTCCGGCGAAAATA 54529 Query 104432 AGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCT 104491 || | ||||||||| ||||| ||||| || || ||||||||||| | || ||||| || Sbjct 54528 AGACGCTGTTGATCGGGAGGGATTCCCTCCTTGTCCTGAATCTTGGACTTCACATTGTCG 54469 Query 104492 ACGGTATCGCTAGG-TTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAA 104550 | || || | ||| || ||||| || || || |||||||| || || || || || || Sbjct 54468 ATCGTGTC-CGAGGACTCGACCTCAAGGGTGATGGTCTTACCCGTGAGGGTCTTGACGAA 54410 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151395803596608