Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scedosporium_20apiospermum_20[genbank_20GCA_5F000732125.1_202014-07- 21] 176 sequences; 43,437,139 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq165 161 9e-35 seq121 143 2e-29 seq110 102 8e-17 >seq165 Length=1469810 Score = 161 bits (178), Expect = 9e-35 Identities = 176/232 (76%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| || ||||| | || || || || || ||||||||| ||||| ||||| ||| Sbjct 93414 CCGCCACGAAGACGGAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAG 93473 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| |||| |||||||||||||||||||| ||||||||||||||||| | ||| Sbjct 93474 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGTTGGTCGGGGGGG 93533 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCCA 41813 | || |||||||||| ||| || ||| || | || | ||||| ||||| | Sbjct 93534 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG--ATCGTGTCCGAGGACTCGA 93591 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 |||| | || || || || ||||| || ||||| ||||| || |||||||| Sbjct 93592 CCTCGAGGGTGATGGTCTTGCCCGTTAGGGTCTTGACGAAGATTTGCATGTT 93643 >seq121 Length=2448542 Score = 143 bits (158), Expect = 2e-29 Identities = 164/218 (75%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||||||| |||||| ||||||||| || || ||||||||| Sbjct 310539 CCACCACGAAGACGGAGGACCAGATGGAGCGTGGACTCCTTCTGGATATTGTAGTCGGAG 310480 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || |||||||||||||||||||| |||| || |||||||| | ||| Sbjct 310479 AGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAAATCAATCGTTGTTGGTCAGGAGGA 310420 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | |||||||||| ||| || ||| ||| | | | |||||| |||||| || Sbjct 310419 ATACCCTCCTTGTCCTGGATCTTCGACTT-AACATTGTCGATGGTGTCGGACGACTCAAC 310361 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGA 41852 ||| | || || || || || || || ||||| |||| Sbjct 310360 CTCGAGGGTGATGGTCTTGCCGGTAAGGGTCTTGACGA 310323 Score = 116 bits (128), Expect = 3e-21 Identities = 167/230 (73%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || || || | || ||||| |||||| ||||||||| || || || || || Sbjct 310996 GCCACCACGAAGGCGGAGGACGAGATGGAGCGTGGACTCCTTCTGGATATTGTAATCAGA 310937 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || ||||| |||| || |||||||||||||| || || || ||||| || || | ||| Sbjct 310936 AAGAGTGCGACCGTCCTCAAGCTGCTTGCCGGCAAAAATGAGACGCTGCTGATCGGGGGG 310877 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTG-CTTCAACGACGAC-ACAGTGTCGCTCGACTCC 41812 || | |||||||||| ||| | || | |||| || | | | || ||| ||||| Sbjct 310876 AATTCCCTCCTTGTCC-TGAATCTTCGACTTC-ACATTGTCGATGGTATCGGAAGACTCA 310819 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || | ||| || ||||| || || || ||||| || || |||||||| Sbjct 310818 ACTTCAAGCGTAATGGTTTTGCCGGTAAGGGTCTTGACAAAGATCTGCAT 310769 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || || || || ||| ||||||||||||||| || || || Sbjct 310767 CCTCCACGGAGACGGAGGACGAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAATCAGAA 310708 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || || || ||||| || || || || || || || ||||| | || Sbjct 310707 AGGGTGCGGCCATCTTCCAGTTGCTTACCAGCAAAGATAAGACGTTGCTGGTCGGGAGGG 310648 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || |||||| ||| ||| | || | | |||| | | | ||||| || || || Sbjct 310647 ATGCCCTCCTTATCC-TGAATCTTGGACTTAACGTTGTCGATGGTGTCCGATGATTCAAC 310589 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || | || ||||| || || || || ||||| |||||||||||||| Sbjct 310588 TTCGAGGGTAATCGTCTTGCCAGTAAGAGTCTTCACGAAAATCTGCAT 310541 Score = 100 bits (110), Expect = 3e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | || || || || ||| ||||||||||| || || || || Sbjct 310229 CCACCACGAAGGCGGAGAACAAGGTGAAGGGTGGATTCCTTCTGAATATTGTAATCAGAA 310170 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || |||| || |||||||| || ||||| ||||||||||||||||| | ||| Sbjct 310169 AGGGTTCGGCCGTCCTCAAGCTGCTTTCCAGCGAAAATCAGGCGCTGTTGGTCGGGGGGG 310110 Query 41756 ACGCTCTCCTTGTCCATGATTTT 41778 | || |||||||||| ||| || Sbjct 310109 ATGCCCTCCTTGTCCTGGATCTT 310087 >seq110 Length=3171699 Score = 102 bits (112), Expect = 8e-17 Identities = 136/184 (74%), Gaps = 4/184 (2%) Strand=Plus/Minus Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732 |||||||||| || || || || |||||||| | || ||||||||||| |||||||| | Sbjct 54590 CCTTCTGAATATTGTAATCAGAAAGGGTGCGGCCATCCTCGAGCTGCTTTCCGGCGAAAA 54531 Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTG-CTTCAACGAC 41791 | || |||||||| || | || | | |||||||||| ||| | || | |||| || Sbjct 54530 TAAGACGCTGTTGATCGGGAGGGATTCCCTCCTTGTCC-TGAATCTTGGACTTC-ACATT 54473 Query 41792 GAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850 | | | ||||| ||||| ||||| | || || || |||||||| || ||||| || Sbjct 54472 GTCGATCGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTACCCGTGAGGGTCTTGAC 54413 Query 41851 GAAA 41854 |||| Sbjct 54412 GAAA 54409 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462302982931200