Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scedosporium_20aurantiacum_20[genbank_20GCA_5F000812075.1_202014-12- 31] 1,584 sequences; 39,890,731 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq1408 179 3e-40 seq910 123 2e-23 seq2 93.3 4e-14 >seq1408 Length=106487 Score = 179 bits (198), Expect = 3e-40 Identities = 180/232 (78%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 |||||||| ||||| | || || || || ||| ||||||||| ||||| ||||||||| Sbjct 91045 CCGCCGCGAAGACGGAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 91104 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| |||| |||||||||||||||||||| ||||||||||| ||||| | ||| Sbjct 91105 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGGG 91164 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCCA 41813 | || |||||||||| ||| || ||| || | || | ||||| ||||| | Sbjct 91165 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG--ATCGTGTCCGAGGACTCGA 91222 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 |||| | || || ||||||||||| || ||||| ||||| || |||||||| Sbjct 91223 CCTCGAGGGTAATGGTTTTACCCGTTAGGGTCTTGACGAAGATTTGCATGTT 91274 >seq910 Length=30028 Score = 123 bits (136), Expect = 2e-23 Identities = 160/219 (73%), Gaps = 4/219 (2%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || ||||| || || ||||||||| || || ||||| ||| Sbjct 19694 CCACCACGGAGACGGAGAACAAGATGGAGAGTAGACTCCTTCTGGATATTGTAGTCCGAG 19635 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || |||||||||||||||||||| |||| || |||||||| | ||| Sbjct 19634 AGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAAATCAATCGTTGTTGGTCAGGAGGA 19575 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCCA 41813 | | |||||||||| ||| || ||| || | || | |||||| |||||| | Sbjct 19574 ATACCCTCCTTGTCCTGGATCTTCGACTTGACATTGTCG--ATGGTGTCGGACGACTCGA 19517 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGA 41852 |||| | || || || || || || || ||||| |||| Sbjct 19516 CCTCGAGGGTAATGGTCTTGCCGGTAAGGGTCTTGACGA 19478 Score = 113 bits (124), Expect = 4e-20 Identities = 106/135 (79%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | || ||||| || || |||||||||||| || ||||| ||| Sbjct 19386 CCACCACGAAGGCGGAGAACAAGATGGAGAGTAGACTCCTTCTGAATATTGTAGTCAGAG 19327 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| |||| || |||||||| || ||||| ||||||||||| ||||| | ||| Sbjct 19326 AGGGTGCGGCCGTCCTCAAGCTGCTTTCCAGCGAAAATCAGGCGCTGCTGGTCGGGGGGG 19267 Query 41756 ACGCTCTCCTTGTCC 41770 | || |||||||||| Sbjct 19266 ATGCCCTCCTTGTCC 19252 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || || || || ||| ||||||||||||||| || || || Sbjct 19922 CCACCACGAAGACGGAGGACAAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAATCAGAA 19863 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || || |||||||| || || || || || || ||||| || | ||| Sbjct 19862 AGGGTGCGGCCATCTTCAAGCTGCTTACCAGCAAAGATGAGACGTTGTTGATCGGGAGGA 19803 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | |||||||||| ||| || |||| ||| | | | ||||| || || || Sbjct 19802 ATACCCTCCTTGTCCTGGATCTTGGACTTC-ACGTTGTCGATGGTGTCCGATGATTCAAC 19744 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || | || ||||| || || || || ||||| ||||| |||||||| Sbjct 19743 TTCGAGGGTAATCGTCTTGCCAGTAAGAGTCTTCACGAAGATCTGCAT 19696 Score = 98.7 bits (108), Expect = 9e-16 Identities = 163/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || || || | || ||||| || ||| ||||||||| ||||| || || || Sbjct 20151 GCCACCACGAAGGCGGAGGACAAGATGGAGTGTGGACTCCTTCTGGATGTTGTAATCAGA 20092 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || ||||| | || || ||||||||||| ||||| || || ||||| || || | ||| Sbjct 20091 AAGAGTGCGACCATCCTCAAGCTGCTTGCCAGCGAAAATGAGACGCTGCTGATCGGGGGG 20032 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTG-CTTCAACGACGAC-ACAGTGTCGCTCGACTCC 41812 || | ||||||||| ||| | || | |||| || | | | || || || || Sbjct 20031 AATTCCTTCCTTGTCC-TGAATCTTCGACTTC-ACATTGTCGATGGTATCCGAAGATTCA 19974 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| | ||| || || || || || || ||||| || || |||||||| Sbjct 19973 ACCTCGAGCGTAATAGTCTTGCCAGTAAGGGTCTTGACAAAGATCTGCAT 19924 >seq2 Length=228398 Score = 93.3 bits (102), Expect = 4e-14 Identities = 134/184 (73%), Gaps = 4/184 (2%) Strand=Plus/Minus Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732 |||||||||| || || || || |||||||| | || ||||||||||| |||||||| | Sbjct 5591 CCTTCTGAATATTGTAATCAGAAAGGGTGCGGCCATCCTCGAGCTGCTTTCCGGCGAAAA 5532 Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTG-CTTCAACGAC 41791 | || ||||| ||||| | ||| | | |||||| ||| ||| | || | |||| || Sbjct 5531 TAAGACGCTGCTGGTCGGGGGGGATTCCCTCCTTATCC-TGAATCTTGGACTTC-ACATT 5474 Query 41792 GAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850 | | | ||||| ||||| ||||| | || || || || ||||| || ||||| || Sbjct 5473 GTCGATCGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTGAC 5414 Query 41851 GAAA 41854 ||| Sbjct 5413 AAAA 5410 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462294846380800