Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scedosporium_20boydii_20[genbank_20GCA_5F002221725.1_202017-07-19] 587 sequences; 43,301,991 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq5 116 4e-21 seq38 114 1e-20 seq287 87.8 2e-12 >seq5 Length=463292 Score = 116 bits (128), Expect = 4e-21 Identities = 143/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || ||||||||||||| ||||| || |||| || |||||||| || ||||| Sbjct 253185 CTCCTTCTGGATATTGTAATCAGAAAGAGTGCGGCCGTCCTCAAGCTGCTTGCCGGCGAA 253244 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110 ||||| |||||||| |||| || | | |||||||||| ||| | || | || | Sbjct 253245 AATGAGACGCTGCTGATCGGGGGGGATTCCCTCCTTGTCC-TGAATCTTCGACTTCACAT 253303 Query 43111 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | || ||| || || || |||| ||| ||||| ||||| || || ||||| | Sbjct 253304 TGTCGATGGTATCGGAAGACTCGACTTCGAGCGTAATGGTCTTGCCGGTAAGGGTCTTGA 253363 Query 43171 CAAAGATTTGCAT 43183 ||||||| ||||| Sbjct 253364 CAAAGATCTGCAT 253376 Score = 95.1 bits (104), Expect = 1e-14 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||| |||||||||||||||| || || || |||| || |||||||| |||||||| Sbjct 253952 TCCTTCTGAATATTGTAATCAGAAAGGGTTCGGCCGTCCTCAAGCTGCTTTCCAGCGAAA 254011 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTT 43099 || || |||||||| |||| || | || |||||||||| ||| || Sbjct 254012 ATCAGGCGCTGCTGATCGGGGGGAATGCCCTCCTTGTCCTGGATCTT 254058 Score = 93.3 bits (102), Expect = 5e-14 Identities = 140/194 (72%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| ||||| |||||||||| || || || | || || || ||||||||||| || Sbjct 253413 CTCCTTCTGAATGTTGTAATCAGAAAGGGTGCGGCCATCTTCCAGTTGCTTACCAGCAAA 253472 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110 || || || || ||||||| || | || |||||| ||| ||| | || | |||| || Sbjct 253473 GATAAGACGTTGTTGGTCGGGAGGGATGCCCTCCTTATCC-TGAATCTTGGACTTGA-CG 253530 Query 43111 TCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTT 43169 | | | | ||||| ||||| || |||| || || || ||||| || || ||||| Sbjct 253531 TTGTCGATGGTGTCCGATGATTCAACTTCGAGGGTAATCGTCTTGCCGGTAAGAGTCTTC 253590 Query 43170 ACAAAGATTTGCAT 43183 || || || ||||| Sbjct 253591 ACGAAAATCTGCAT 253604 >seq38 Length=234780 Score = 114 bits (126), Expect = 1e-20 Identities = 143/196 (73%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || | || || || |||| || |||||||| || ||||| Sbjct 18491 CTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 18550 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || ||||| ||||||| || | || |||||||||| ||| || |||| | Sbjct 18551 GATCAGACGCTGTTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATT 18610 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | |||||| || || || || | |||||||| ||||||||||| ||||| || Sbjct 18611 GTCGATCGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTTAGGGTCTTGAC 18670 Query 43172 AAAGATTTGCATTTTT 43187 ||||||||||| ||| Sbjct 18671 GAAGATTTGCATGTTT 18686 >seq287 Length=44202 Score = 87.8 bits (96), Expect = 2e-12 Identities = 130/182 (71%), Gaps = 2/182 (1%) Strand=Plus/Plus Query 42994 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 43053 |||| |||||||||||||||| || || || | || || |||||||| || ||||| | Sbjct 23319 CCTTCTGAATATTGTAATCAGAAAGGGTGCGGCCATCCTCGAGCTGCTTTCCGGCGAAAA 23378 Query 43054 TGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTC 43112 | || ||||| || |||| || | | |||||||||| ||| | || | || | | Sbjct 23379 TAAGACGCTGTTGATCGGGAGGGATTCCCTCCTTGTCC-TGAATCTTGGACTTCACATTG 23437 Query 43113 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172 | | |||||| || || || || | |||||||| || ||||| || ||||| ||| Sbjct 23438 TCGATCGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTACCCGTGAGGGTCTTGACA 23497 Query 43173 AA 43174 || Sbjct 23498 AA 23499 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571813404288360