Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scedosporium_20boydii_20[genbank_20GCA_5F002221725.1_202017-07-19] 587 sequences; 43,301,991 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq67 125 1e-23 seq80 107 4e-18 seq25 86.0 1e-11 >seq67 Length=180816 Score = 125 bits (138), Expect = 1e-23 Identities = 422/654 (65%), Gaps = 5/654 (1%) Strand=Plus/Plus Query 279711 GGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGTGCCGATGTCCTA 279770 |||||||||||||||||||| || || | || ||||| || | | ||||| |||||| Sbjct 75698 GGTGGTTGGAAGATGAAGCTCGCTCTGGCCCGAGCCATGCTTCAGAAGGCCGACGTCCTA 75757 Query 279771 CTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGGCTAGTGTCCTAC 279830 || || || || || || ||||| | ||| ||||||| ||||| | | |||| Sbjct 75758 CTCCTGGACGAACCTACTAACCATCTCGACGTTGCCAACGTCAAGTGGCTCGAGAACTAC 75817 Query 279831 CTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCTGGCTTCCTAGAT 279890 || | || | | || | | || || || ||||||||||||||||| ||| Sbjct 75818 CTCAAGAGCAACACCCAGATTACCAGTTTGATCGTATCCCACGACTCTGGCTTCCTGGAT 75877 Query 279891 GCCGTGTGCTCTGCCATCATTCACTATGAGCAAAATCTGAAGCTCTCCAAGCACATCGGC 279950 | || | | | ||| ||||| |||| || ||||||| || | || |||| Sbjct 75878 GAGGTTACCACGGATATCTACCACTACGAGCCCAACAAGAAGCTCGCCCACTACCGCGGC 75937 Query 279951 AACCTGTCTGCTTTCGTGGCAAAGCGCCCTGAGGCGGCCGCCTACTATGACCTGAAGGAC 280010 ||||| | || || || | ||| || ||||| |||||| ||| | | Sbjct 75938 AACCTCGCCGCGTTTGTCAAGATGCGACCCGAGGCCAAGAGCTACTACACCCTCTCTGCC 75997 Query 280011 GCCACCGCCAAGTGGGAATTCCCTGAGCCAGGGTTTCTGGAGGGCATCACATCAAAGGAT 280070 ||| || | ||| | ||||| | || || | ||| || ||| || | | Sbjct 75998 TCCAACGTCCAGTTCAAGTTCCCCGCCCCCGGTCTCCTGACCGGAGTCAAGTCCATGACC 76057 Query 280071 CGCGCAATCATGAAGCTCCGTGGCGTCTCCTTTGCTTATCCCAATGGCCCCAACATCTTC 280130 ||||| || ||||| | | ||||||| | || ||| | | | || || | Sbjct 76058 CGCGCGATTCTGAAGATGAGCAATGTCTCCTACACCTACCCCGGCGCCTCGAAACCCTCC 76117 Query 280131 AGCAGTGTCAACTCG---CAGGTTTCTATGAACTCACGGATTGGTGTCATTGGACCCAAT 280187 | | | ||| ||| ||||| || ||| || ||| |||| || || || Sbjct 76118 CTCGTCGACGCCTCCTGCCAGCTTTCTCTGTCCTCTCGAGTTGCCATCATCGGTCCTAAC 76177 Query 280188 GGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCCAGGCC-ACTGAGGG 280246 |||||||| ||||| ||| | ||||| |||| || ||||| || | || || | || Sbjct 76178 GGTGCGGGCAAGTCCACCATGATCAAGCTCCTCACCGGCGA-ACTTATTCCCACGGTCGG 76236 Query 280247 GTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGCACGCTTTCCACCA 280306 ||| ||||||||||||| |||| || | ||| || ||||||||||| | || Sbjct 76237 CCGCGTCGAGAAGCATCCCAACTTGCGTATCGGCTACATCAAGCAGCACGCTTTGGAGCA 76296 Query 280307 CATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGGCGCTATGC 280360 | |||||| || || || | ||| || ||||| ||| |||||||||| ||||| Sbjct 76297 CGTCGAGATGCATCTTGAGAAGACGCCCAACCAGTACCTTCAGTGGCGATATGC 76350 >seq80 Length=157687 Score = 107 bits (118), Expect = 4e-18 Identities = 177/250 (71%), Gaps = 4/250 (2%) Strand=Plus/Plus Query 279318 GACGAAGCAGAGAAGGA-GACTGAGCCAGGTGAGGATCTGTGTGACTGTGATTTCTCGCT 279376 ||||| | ||| |||| ||| ||| || ||||| || || |||| ||||| || Sbjct 106075 GACGAGGAGGAGGAGGATGAC-GAGGAGGGCGAGGACCTCTGCAACTGCACGTTCTCTCT 106133 Query 279377 CGCATATGGTGGGAAGATTCTGCTAAACTCTACCCGCCTCAACATCAAGCGTGGCAACCG 279436 ||| || |||| |||||||| || ||| ||| | ||| | ||||||||||| | || Sbjct 106134 CGCCTACGGTGCCAAGATTCTTCTCAACCAGACCGGTCTCCGCCTCAAGCGTGGCCAGCG 106193 Query 279437 GTATGGTCTCATCGGTCCCAATGGAGCGGGTAAGAGCACTCTAATGCGCGCCATTGCAAA 279496 |||||||| ||||||||| || | || ||| ||||| ||||| ||||| || Sbjct 106194 CTATGGTCTTTGCGGTCCCAACGGTTCCGGCAAGTCTACTCTCATGCGTGCCATCAACAA 106253 Query 279497 CGGTCAGCTGGAAGGATTTCCTAACGCA-TCTGAGGTAAGGACAGTGTATGTAGAGCACG 279555 || ||| | || || || || || ||| || ||||| | ||| || | || ||||||| Sbjct 106254 CGAGCAGGTCGAGGGCTTCCCCAA-GCAGTCCGAGGTCAAGACCGTCTTCGTCGAGCACG 106312 Query 279556 ACATCGACTC 279565 || | ||||| Sbjct 106313 ACTTGGACTC 106322 Score = 84.2 bits (92), Expect = 4e-11 Identities = 92/120 (77%), Gaps = 2/120 (2%) Strand=Plus/Plus Query 280704 CACTCTCGCATTCGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCA-GC 280762 ||||| ||||| |||||||| || || || ||| ||||| | ||| | | || || Sbjct 107506 CACTCGCGCATGCGCGGTCTCTCCGGTGGTCAGCGTGTCAAGGTCGTCCTTGCCGCCTGC 107565 Query 280763 TCTGTGGCAACACCCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGCGA 280822 || |||||| | || ||| ||||||| |||||||||||||| ||||| || |||||||| Sbjct 107566 TC-GTGGCAGCGACCCCACTTGATCGTCCTCGACGAGCCTACTAACTACCTCGACCGCGA 107624 >seq25 Length=276129 Score = 86.0 bits (94), Expect = 1e-11 Identities = 178/264 (67%), Gaps = 1/264 (0%) Strand=Plus/Minus Query 293115 CTGCGTCTGATCGACAAAGGCACCACGATCAGCAGCGAGGTCAATCACTGTCTTCATAGA 293174 ||||| |||||||| |||||||| ||||| ||||| | | | ||| || | || Sbjct 149082 CTGCGACTGATCGATGAAGGCACCTCGATCGGCAGCCATCTGGACCACGGTACGCTGGGA 149023 Query 293175 GATCTCCCACGATGTCTTGTACACTGCCTTGACATCAGGATGAATGCCAATAACCTTCTG 293234 ||| ||||| |||||||| | ||||||| ||| |||||| | || || Sbjct 149022 GATTTCCCATACGGTCTTGTAGAGGGCCTTGATATCCTCGGGAATGCTTGGGATATTTTG 148963 Query 293235 GATAGACCCTCCGTTGGCAATAATCTGGTTCTTCATTGTCTCGGACCAAGTCCCACGAGC 293294 ||||| || || | ||| || || | || ||||| | || |||||| ||| | | Sbjct 148962 AATAGAGCCACCTTCGGCGATGATGCGATTTTTCATCGAGTCCGACCAAAGGCCAAGGTC 148903 Query 293295 AATGAGCTCGCGGACAAGGTAAGAGTTGACAACGGGGAACTCACCAGCGAGAGTGCGACG 293354 || || || |||| ||| | | |||||| || ||||||| || || | ||| || Sbjct 148902 AACAAGATCCCGGAGAAGCCAGGGGTTGACGACCTGGAACTCGCCCGCCAAGACGCGTCG 148843 Query 293355 GCTGTAAATGTTCGAAGTG-ATGG 293377 |||||||||||| ||| |||| Sbjct 148842 TTGGTAAATGTTCGATGTGTATGG 148819 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027829069703667