Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20glacialis_20[genbank_20GCA_5F002162575.1_202017-05-31] 623 sequences; 41,098,534 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq9 127 2e-24 seq34 122 9e-23 seq18 104 2e-17 >seq9 Length=1212739 Score = 127 bits (140), Expect = 2e-24 Identities = 203/287 (71%), Gaps = 7/287 (2%) Strand=Plus/Plus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||||||||| ||||| || |||||||||| || ||| | ||| || Sbjct 164860 ATCTGGCAGATGTACAAAAAGGCAGAGGCCTCCTTCTGGACCGCAGAAGAGATTGACTTG 164919 Query 116696 TCCAAGGA----CACGAGCG-ACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCA 116750 || ||||| ||||| | | | || ||| || ||| ||||||| | |||||| Sbjct 164920 TCAAAGGATCTTCACGATTGGAATAACAG-GCTC-AATGACGACGAGCGTTACTTCATCT 164977 Query 116751 AGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGC 116810 ||||| || || || ||||| || ||| || || ||||||||||| | ||| | Sbjct 164978 CTCACGTTCTCGCATTCTTCGCAGCATCCGATGGAATTGTCAACGAGAACTTAGTCTCGA 165037 Query 116811 GTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCA 116870 | ||| | | || || || | || ||||| || | ||||||||| || || || | Sbjct 165038 GATTCAGTAATGAAGTTCAAATTGCAGAGGCACGATTCTTCTACGGTTTCCAAGTCATGA 165097 Query 116871 TGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917 |||||||| | ||||| |||| || || ||||||||||| ||| Sbjct 165098 TGGAGAACATCCACTCCGAAACATACTCTCTTCTCATCGACACATAC 165144 >seq34 Length=376069 Score = 122 bits (134), Expect = 9e-23 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || |||||||||||||| |||||| |||| || || | | Sbjct 166531 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAAACTATCACCCTCGAGGTTGAGTCTTCG 166472 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||||| || || | ||||| ||||| || || | ||||| Sbjct 166471 GACACCATCGACAATGTCAAGGCCAAGATCCAAGACAAGGAGGGAATTCCACCCGACCAA 166412 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || ||| | |||| ||| || || || || || || | |||||||| |||||||||| Sbjct 166411 CAGCGATTGATCTTCGCCGGAAAGCAACTCGAGGATGGCCGCACCCTTTCCGACTACAAC 166352 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||| |||||| |||| || || | ||||| || Sbjct 166351 ATCCAAAAGGAGTCCACTCTTCACTTGGTGTTACG 166317 >seq18 Length=877782 Score = 104 bits (114), Expect = 2e-17 Identities = 144/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 40696 ATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGC 40755 ||| |||| || || ||||| || || ||||||||| |||| || ||| | | || | Sbjct 575798 ATAGTCGTTAAGACCCTCACCGGAAAGACCATCACCCTCGAGGTTGAATCTTCTGATACT 575739 Query 40756 GTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACG 40814 | | |||| |||| | || |||| ||||||||||||||||| | ||||| ||||| Sbjct 575738 ATCGATAACG-TCAAAGCCAAGATTCAAGACAAAGAGGGCATCCCACCCGACCAACAACG 575680 Query 40815 ACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCA 40874 | || | ||| || || || || || || | || |||||| ||||| |||||||| Sbjct 575679 TTTGATTTTCGCCGGAAAGCAACTTGAGGATGGTCGTACCCTCTCAGACTATAACATCCA 575620 Query 40875 GAAGGAGGCCACGCTGCAT 40893 ||||||| | || || ||| Sbjct 575619 GAAGGAGTCTACTCTCCAT 575601 Score = 86.0 bits (94), Expect = 6e-12 Identities = 130/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 40714 ACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTCAAGGAA 40773 || || || ||||||||| | || ||||| ||| ||||| | | | |||| | Sbjct 576064 ACTGGAAAGACCATCACCCTTGAGGTCGAGTCCAGCGACACTATTGACAATGTCAAAGCC 576005 Query 40774 AAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAA 40833 || || | ||||| ||||| || || | || || || || | || | ||| ||||| Sbjct 576004 AAGATCCAAGACAAGGAGGGGATTCCTCCCGATCAACAGCGTTTGATTTTCGCAGGCAAG 575945 Query 40834 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCAT 40893 || || || || | ||||||||| ||||||||||| ||||||||| |||| || ||| Sbjct 575944 CAACTTGAAGATGGTCGCACCCTCTCAGACTACAACATTCAGAAGGAGTCCACACTTCAT 575885 Query 40894 CTAGT 40898 || || Sbjct 575884 CTCGT 575880 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515215187730480