Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20glacialis_20[genbank_20GCA_5F002162575.1_202017-05-31]
623 sequences; 41,098,534 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq9 127 2e-24
seq34 122 9e-23
seq18 104 2e-17
>seq9
Length=1212739
Score = 127 bits (140), Expect = 2e-24
Identities = 203/287 (71%), Gaps = 7/287 (2%)
Strand=Plus/Plus
Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695
|| |||| |||||||||||||| ||||| || |||||||||| || ||| | ||| ||
Sbjct 164860 ATCTGGCAGATGTACAAAAAGGCAGAGGCCTCCTTCTGGACCGCAGAAGAGATTGACTTG 164919
Query 116696 TCCAAGGA----CACGAGCG-ACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCA 116750
|| ||||| ||||| | | | || ||| || ||| ||||||| | ||||||
Sbjct 164920 TCAAAGGATCTTCACGATTGGAATAACAG-GCTC-AATGACGACGAGCGTTACTTCATCT 164977
Query 116751 AGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGC 116810
||||| || || || ||||| || ||| || || ||||||||||| | ||| |
Sbjct 164978 CTCACGTTCTCGCATTCTTCGCAGCATCCGATGGAATTGTCAACGAGAACTTAGTCTCGA 165037
Query 116811 GTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCA 116870
| ||| | | || || || | || ||||| || | ||||||||| || || || |
Sbjct 165038 GATTCAGTAATGAAGTTCAAATTGCAGAGGCACGATTCTTCTACGGTTTCCAAGTCATGA 165097
Query 116871 TGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917
|||||||| | ||||| |||| || || ||||||||||| |||
Sbjct 165098 TGGAGAACATCCACTCCGAAACATACTCTCTTCTCATCGACACATAC 165144
>seq34
Length=376069
Score = 122 bits (134), Expect = 9e-23
Identities = 156/215 (73%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || |||||||||||||| |||||| |||| || || | |
Sbjct 166531 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAAACTATCACCCTCGAGGTTGAGTCTTCG 166472
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | | | |||||| || || | ||||| ||||| || || | |||||
Sbjct 166471 GACACCATCGACAATGTCAAGGCCAAGATCCAAGACAAGGAGGGAATTCCACCCGACCAA 166412
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| ||| | |||| ||| || || || || || || | |||||||| ||||||||||
Sbjct 166411 CAGCGATTGATCTTCGCCGGAAAGCAACTCGAGGATGGCCGCACCCTTTCCGACTACAAC 166352
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904
||||| |||||| |||| || || | ||||| ||
Sbjct 166351 ATCCAAAAGGAGTCCACTCTTCACTTGGTGTTACG 166317
>seq18
Length=877782
Score = 104 bits (114), Expect = 2e-17
Identities = 144/199 (72%), Gaps = 2/199 (1%)
Strand=Plus/Minus
Query 40696 ATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGC 40755
||| |||| || || ||||| || || ||||||||| |||| || ||| | | || |
Sbjct 575798 ATAGTCGTTAAGACCCTCACCGGAAAGACCATCACCCTCGAGGTTGAATCTTCTGATACT 575739
Query 40756 GTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACG 40814
| | |||| |||| | || |||| ||||||||||||||||| | ||||| |||||
Sbjct 575738 ATCGATAACG-TCAAAGCCAAGATTCAAGACAAAGAGGGCATCCCACCCGACCAACAACG 575680
Query 40815 ACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCA 40874
| || | ||| || || || || || || | || |||||| ||||| ||||||||
Sbjct 575679 TTTGATTTTCGCCGGAAAGCAACTTGAGGATGGTCGTACCCTCTCAGACTATAACATCCA 575620
Query 40875 GAAGGAGGCCACGCTGCAT 40893
||||||| | || || |||
Sbjct 575619 GAAGGAGTCTACTCTCCAT 575601
Score = 86.0 bits (94), Expect = 6e-12
Identities = 130/185 (70%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 40714 ACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTCAAGGAA 40773
|| || || ||||||||| | || ||||| ||| ||||| | | | |||| |
Sbjct 576064 ACTGGAAAGACCATCACCCTTGAGGTCGAGTCCAGCGACACTATTGACAATGTCAAAGCC 576005
Query 40774 AAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAA 40833
|| || | ||||| ||||| || || | || || || || | || | ||| |||||
Sbjct 576004 AAGATCCAAGACAAGGAGGGGATTCCTCCCGATCAACAGCGTTTGATTTTCGCAGGCAAG 575945
Query 40834 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCAT 40893
|| || || || | ||||||||| ||||||||||| ||||||||| |||| || |||
Sbjct 575944 CAACTTGAAGATGGTCGCACCCTCTCAGACTACAACATTCAGAAGGAGTCCACACTTCAT 575885
Query 40894 CTAGT 40898
|| ||
Sbjct 575884 CTCGT 575880
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515215187730480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |