Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20glacialis_20[genbank_20GCA_5F002162575.1_202017-05-31]
623 sequences; 41,098,534 total letters
Query= NC_002169.1
Length=135611
Score E
Sequences producing significant alignments: (Bits) Value
seq34 132 4e-26
seq5 93.3 4e-14
seq18 84.2 2e-11
>seq34
Length=376069
Score = 132 bits (146), Expect = 4e-26
Identities = 159/216 (74%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 118527 AACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCC 118586
||||||||||| | || ||||| ||||| |||||||| ||| | ||||| ||||
Sbjct 166320 AACACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCC 166379
Query 118587 TCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCT 118646
||||| || ||||| ||| |||| | ||||| || ||||| || || ||||||||||||
Sbjct 166380 TCGAGTTGCTTTCCGGCGAAGATCAATCGCTGTTGGTCGGGTGGAATTCCCTCCTTGTCT 166439
Query 118647 GTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTT 118706
|| || || || | |||| |||||||| ||| ||||||| ||| | |||
Sbjct 166440 TGGATCTTGGCCTTGACATTGTCGATGGTGTCCGAAGACTCAACCTCGAGGGTGATAGTT 166499
Query 118707 TTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 118742
||||| || || || || || || ||||||||| ||
Sbjct 166500 TTGCCCGTGAGGGTCTTGACGAAGATCTGCATGACT 166535
>seq5
Length=1928780
Score = 93.3 bits (102), Expect = 4e-14
Identities = 128/179 (72%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 118551 TTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATG 118610
||||| ||||||||||| | ||| || ||||| || || ||||||||| ||||
Sbjct 1275125 TTTTGGATGTTGTAATCTGAAAGAGTACGTCCGTCCTCAAGTTGCTTTCCAGCGAAGATC 1275184
Query 118611 AGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCG 118670
| ||| || |||||||| || || |||||||||||| || || ||||| | |||
Sbjct 1275185 AAACGTTGTTGATCGGGGGGAATTCCCTCCTTGTCTTGGATCTTAGCCTTAACATTGTCG 1275244
Query 118671 ACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAA 118729
| ||||| | | ||||||||| | ||| | || ||||| || || || || || ||
Sbjct 1275245 ATAGTGTCAGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTAAGGGTCTTGACGAA 1275303
>seq18
Length=877782
Score = 84.2 bits (92), Expect = 2e-11
Identities = 124/176 (70%), Gaps = 0/176 (0%)
Strand=Plus/Plus
Query 118541 TGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCC 118600
||| ||||| || ||||||||||| || | ||||| ||| || || || || ||
Sbjct 575891 TGTGGACTCCTTCTGAATGTTGTAGTCTGAGAGGGTGCGACCATCTTCAAGTTGCTTGCC 575950
Query 118601 AGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTT 118660
||| | || | |||||| ||||||||||| || |||||||||||| || || |||
Sbjct 575951 TGCGAAAATCAAACGCTGTTGATCGGGAGGAATCCCCTCCTTGTCTTGGATCTTGGCTTT 576010
Query 118661 AACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCA 118716
|| | || | ||||| || ||||||||| | ||| | || || || ||||
Sbjct 576011 GACATTGTCAATAGTGTCGCTGGACTCGACCTCAAGGGTGATGGTCTTTCCAGTCA 576066
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433827106007116
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |