Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20glacialis_20[genbank_20GCA_5F002162575.1_202017-05-31] 623 sequences; 41,098,534 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq34 129 5e-25 seq18 93.3 3e-14 >seq34 Length=376069 Score = 129 bits (142), Expect = 5e-25 Identities = 157/214 (73%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 45124 TAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTC 45183 ||| |||||||| || ||| |||||| || |||||||||||| || ||| | || Sbjct 166319 TAACACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAAAGGGTGCGGCCATC 166378 Query 45184 GTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTC 45243 || ||||| ||||||||||| ||||| |||||||||||||| || | ||||||||||| Sbjct 166379 CTCGAGTTGCTTTCCGGCGAAGATCAATCGCTGTTGGTCGGGTGGAATTCCCTCCTTGTC 166438 Query 45244 CGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGT 45303 || || ||| || | | | ||||| | ||| ||||| | ||| || || Sbjct 166439 TTGGATCTTGGCCTTGACATTGTCGATGGTGTCCGAAGACTCAACCTCGAGGGTGATAGT 166498 Query 45304 CTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 |||||||| || ||||| || ||||| |||||| Sbjct 166499 TTTGCCCGTGAGGGTCTTGACGAAGATCTGCATG 166532 >seq18 Length=877782 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||||| ||||| ||||| ||||||||||| || || | |||| ||| Sbjct 575140 ACCAAGTGCAAGGTGCTTTCCTTTTGAATGTTGTAATCCAAAAGAGTTCTGCCGTCCTCC 575199 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 | || ||||| ||||| ||||| |||||||| || || || | |||||||| ||| | Sbjct 575200 AACTGCTTTCCAGCGAAGATCAATCGCTGTTGATCAGGTGGAATGCCCTCCTTATCCTGA 575259 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | ||| | || ||||| | || || ||||| Sbjct 575260 ATCTTAGCCTTGACATTATCAATAGTATCCGAAGATTCTACCTCTAATGTGATAGTCTTT 575319 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || |||| ||||| |||||||||||||| Sbjct 575320 CCAGTCAAGGTCTTAACAAAGATTTGCAT 575348 Score = 91.5 bits (100), Expect = 1e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 45134 TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGT 45193 || || ||| ||||||||||||||||||||| || |||| | || || ||||| Sbjct 575886 TGAAGTGTGGACTCCTTCTGAATGTTGTAGTCTGAGAGGGTGCGACCATCTTCAAGTTGC 575945 Query 45194 TTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTC 45243 || || ||||| ||||| |||||||| |||||||| | ||||||||||| Sbjct 575946 TTGCCTGCGAAAATCAAACGCTGTTGATCGGGAGGAATCCCCTCCTTGTC 575995 Score = 82.4 bits (90), Expect = 6e-11 Identities = 101/136 (74%), Gaps = 4/136 (3%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||| | | ||| | ||||| || || || ||||||||| ||||| ||||| | Sbjct 575578 CCACCACGAAGTCTGAGAACCAAATGGAGAGTAGACTCCTTCTGGATGTTATAGTC--TG 575635 Query 45170 AGTTGG--CGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAG 45227 || || ||| | || || ||||| ||||||||||| ||||| || ||||||||||| | Sbjct 575636 AGAGGGTACGACCATCCTCAAGTTGCTTTCCGGCGAAAATCAAACGTTGTTGGTCGGGTG 575695 Query 45228 GCACACCCTCCTTGTC 45243 | | ||||| ||||| Sbjct 575696 GGATGCCCTCTTTGTC 575711 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395072200268083