Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20glacialis_20[genbank_20GCA_5F002162575.1_202017-05-31] 623 sequences; 41,098,534 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq3 279 6e-70 seq9 127 3e-24 >seq3 Length=2126074 Score = 279 bits (308), Expect = 6e-70 Identities = 1317/2067 (64%), Gaps = 53/2067 (3%) Strand=Plus/Plus Query 62046 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 62105 ||||||||||| || || || || | | ||||||| |||||||||||| || || | | Sbjct 690537 GTGAATTGAATAGGTGCTGAGGCAGCCATAGTACGTAAATAGTACATTCCGGTCTTCAAA 690596 Query 62106 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 62165 || | ||||||| ||| |||||| || | ||| | ||||| || Sbjct 690597 CCCAATTTCCATCCAGCAAAGTGCATAGATGTGATCTTGCCCATTGTAGGATCCTTCATG 690656 Query 62166 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 62225 || || ||||| |||||| ||||||||| || || || | || |||||||||| | Sbjct 690657 TGAATGTTCATTGATTGAGATTGATCGATAAATGCACCGCGATCAGCAGCCATTTGAACA 690716 Query 62226 ATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 62285 || || ||| | ||||||||||| ||| || |||| ||| || || |||||| | Sbjct 690717 ATTGTTCGTTGAGAAATTTCCCAAACAGTCTTGTAAAGGGCCTTGATGTCAGCTGGAATG 690776 Query 62286 TTTG---TATTCTGAATGGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATTC 62342 || | | || ||||| ||||||||||| | || || | ||||| || | ||| | Sbjct 690777 TTGGGGATGTTTTGAATAGATCCACCATCAGCAATGATACGGTTCTTCATGTTGTCAGAC 690836 Query 62343 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACTTGGAATTCTCCA 62402 || | | || | || | ||||| |||||||| |||||||||||||| Sbjct 690837 CAAAGACCCATATCAACAAGGTCTTTGAGGAGCCATGGGTTAACAACTTGGAATTCTCCG 690896 Query 62403 GACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCC 62462 | || || | || | ||| || || || || ||||| | | || || || Sbjct 690897 GCCAGAACACGACGTGAGTAGATGTTTGAAGTGTATGGTTCAAAACATTCGTTGAAACCG 690956 Query 62463 AAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCG 62522 | ||||| | ||| ||||| ||||||||||| || | | | || | || ||| Sbjct 690957 AGGATTTGTGAAGTGCTAGCAGTAGGCATAGGTGCAACAAGAAGAGAGTTGCGAATTCCG 691016 Query 62523 TATGTTCTGATTTTATCTTTTAGATGTTCCCAATTCCAAAGATCCGACGGTACAACANNN 62582 | | |||| | || | | ||||||| ||| | ||| || || || Sbjct 691017 TGTTGCTTGATGGATTGCTTCAAAGAGTCCCAATCCCACAAATCAGAAGGAGTGACGCCC 691076 Query 62583 NNNNNNNNATATTGTAGAATACCGTT----ACTGGCGTACGATCCTACATATGTATCATA 62638 |||||| || ||| || ||||| | | ||| || || || || Sbjct 691077 CACATGTCATATTGGAGTTCACCCTTGGAGACTGGAG----AGCCTTGGTAAGTTTCGTA 691132 Query 62639 TGGTCC---TTCCTTCTC-AGCTAGTTTACAACTCGCCTCTAATGCACCGTAATAAATGG 62694 || || |||||| | | || | ||| | || || ||| ||| || |||| Sbjct 691133 CGGGCCAAGTTCCTTTGCGATCTCG---ACAGATGAGGTC-AAGGCAGCGTGGTAGATGG 691188 Query 62695 TTTCAAAGATCTTCTTATTTAGAT-CTTGTGCTTCCGGGCTATCAAATGGATAATTTAAG 62753 | ||||| |||| | || || | |||| ||||| || || |||||| | ||| Sbjct 691189 TCTCAAAAATCTGGATGTTGAGGTGCTTG-GCTTCTGGCGAGTCGAATGGAAGACG-AAG 691246 Query 62754 AG--AATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTAT 62811 || || ||| || || || | ||||||||||||| | ||||||||| ||| | || Sbjct 691247 AGCCAAGAAA-GCATCAGCAAGACCTTGAACACCAACAGCGATAGGTCGATGACGGAAAT 691305 Query 62812 TAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTC 62871 | || |||||| | | |||||||| || ||||| || || || || | |||| Sbjct 691306 TGCTCCTTCTGGCTTCTTGTACTGGATAATAGTTGATATCAATGATCTTGTTCAAGTTTC 691365 Query 62872 TGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA---TCGCCCATCTATT- 62927 | || | |||| ||| || || | || || | |||||| | || | ||| || Sbjct 691366 TAACGACCACTTGGACAACCTCGTGAAGCTTTTGGAAATCATAAGTTCCCTCATTCATGT 691425 Query 62928 --AC-AAACATGTTCAATGCAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCC 62984 || ||| || | | |||| || |||| ||||| || ||||||| | | Sbjct 691426 TGACGAAAGTTGGTAGA-GCAATTGAAGCCAAGTTACAGCAAGCAACCTCATCTGGTGCA 691484 Query 62985 GCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGA 63044 | || | | ||||| ||||| | || | ||||| || | || | ||| Sbjct 691485 GAGTACTCGACGATCTCTGTGCACAAGTTGGAGCTGCGAATAGTACCAAGGTTCTTTTGG 691544 Query 63045 TTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGA 63104 || ||||| ||||| || ||||| || ||||| ||||| ||| | || ||||| | ||| Sbjct 691545 TTGCTCTTCTTGTTGCATGCATCTTTGTAAAGCATGAAAGGATTTCCGGTTTCGGTTTGA 691604 Query 63105 GATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCCTTTCT 63164 | || | ||| | | ||||| | ||||||| || || ||| | | || || Sbjct 691605 GCCTCAAGAATAGAGTACCAGAGCTTTTGAGCCTTGAT---AGTCTTGCGACCCTTTCCT 691661 Query 63165 C---TTTCGTA--TAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATC 63219 |||| || | ||| | | || ||||| || || |||||| |||| | Sbjct 691662 GCCTTTTCATAACTCTCGTAGAGGGCC--TCAAACTCCTCGCCATAAACATCTGCCAAAC 691719 Query 63220 TAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAA 63279 ||| ||||||| || ||||| | | ||| ||||| | | | || || ||||| | Sbjct 691720 CAGGGCATTCATTGGGGCACATAAGAGTCCATTCTCCATTCTTTTCGACACGCTTCATGA 691779 Query 63280 AGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTTGTTCTATGTTCCTCGTTTCCT 63338 | | |||||||||||| | || ||| || ||||| | || | | ||| || || || Sbjct 691780 ACAAATCAGGAATCCACA-AGGCATAGAAGAGATCGCGTGCGCGAACTTCTTCCTTACCG 691838 Query 63339 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 63398 ||||| ||||| || ||| | | || ||| | |||||| || || | ||| | Sbjct 691839 TGGTTCTTGCGTAGATCAAGAAACTCGAAAACATCGGCATGCCATGGCTCAAGGTAAACA 691898 Query 63399 GCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 63458 || | | | || || |||||||| || |||||||| | ||||| || ||||| || || Sbjct 691899 GCAAAAGCACCCGGGCGTTTGTTACCACCCTGATCAACATATCTTGCAGTGTTGTTGAAA 691958 Query 63459 ACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCA 63518 |||| | ||| |||| |||||| || || | ||||| ||||||| ||| || | ||| Sbjct 691959 ACTCGAAGCATGGGAACAATACCATTGGAATTTCCATTAGTACCGGCGATGTATGCACCA 692018 Query 63519 CTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCG 63578 | ||||| || | ||| ||||| || || || || | || ||||| | || Sbjct 692019 GTAGCACGGATTCTGTGAATGTTGAGACCAATACCACCGGCATTCTTTGAGATCATGGCA 692078 Query 63579 CATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAA 63638 || || || || || ||||| || || || ||||| || |||||| | || || Sbjct 692079 CAAATCTTCAAAGTATCGTAGATACCATCAATACTATCCTCTTTCATGTCGATGAGGAAG 692138 Query 63639 CAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTA 63698 || || | ||| | | ||| |||||| ||| | || || ||||| || ||| Sbjct 692139 CACGACGAAAGTTGTGCTTGTGGAGTACCCGCAGAAAAGAGCGTTGGGGAAGCATGTGTA 692198 Query 63699 AACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC-CCATTGATG 63757 || | || | || | | ||||| || || ||||| || ||||| || | || Sbjct 692199 AAGTACTTGTTTGACATCAAGTTGTATGTTTCGATAGCACTTTCGATATCATCACCG-TG 692257 Query 63758 AATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTAT 63817 ||| || || || |||||||| | ||| || ||||| | || ||| ||| | | Sbjct 692258 AATACCCACGGCAACACGCATGATCATTTGTTGAGGACGCTCCGCAACTTTACCATCAAG 692317 Query 63818 TTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCT 63875 || | || ||| || | || || || || || || | ||| ||||| || Sbjct 692318 ACGTAAAAGATATGATCGCTCAAGGGTCTTGAACCCGAAGTATTGGTAGTTGAAA--TCC 692375 Query 63876 CGTTCGTAAATAATAACCGAATTGAGCTTATCCTTATATTTGTTAACTATATCCATGGTA 63935 || || || | |||| | || ||||| | |||| || | | | || || | || Sbjct 692376 CGGTCATAGACAATAGCAGAGTTGAGTTCTTCCTCATGTCTCATGACGCATTCGAAAGT- 692434 Query 63936 ATACTTG-AAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATC 63994 | |||| ||| || |||||| ||| |||||||| || || ||| | | ||||||| Sbjct 692435 TTCCTTGCTAATCATAGGAGAAGCTTTGCCATTTTTTGGGTTTGTATATTGGTATAAATC 692494 Query 63995 CTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCT 64054 || || | || | || || |||| ||||| || ||||||| || || | Sbjct 692495 GCGGATAACGTGGGAGAACTGCTTCTTGGTTTGTTTGTGGAGGTTTGATACTGCAATACG 692554 Query 64055 GGCGGCTAGAATGGCATAATCCGGATG 64081 || ||||||||||||||||| ||||| Sbjct 692555 AGCAGCTAGAATGGCATAATCGGGATG 692581 >seq9 Length=1212739 Score = 127 bits (140), Expect = 3e-24 Identities = 338/514 (66%), Gaps = 7/514 (1%) Strand=Plus/Minus Query 33291 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 33350 |||||||| || || || | || ||||| || || || || || |||| || || || Sbjct 165760 TTTTGGTAATCTCCAACTCTCTTCTCGAAGAAGTTGGTCTTGCCAGCCAAGGAGATGTTC 165701 Query 33351 TCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAATTCAGAAATC 33410 |||||||| || || || |||| | ||||| | ||| | ||||| || | | Sbjct 165700 TCCATGAAGTCGAATGGGTTGGCAGACTTGTAGACTTTGTCGTTACCCAAAGCAACCAGC 165641 Query 33411 AATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTAT--GA 33468 | | ||| |||||||| || || ||| ||||| | | | ||||| |||| || Sbjct 165640 AGACGATCAGCGACGAACTCAATGTATTGCTTCATGAGAGTAGAGTTCATGCCTAAAAGA 165581 Query 33469 GTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATAA 33528 | || ||||||||| | || | ||||||||||| || || || | || || | Sbjct 165580 GAGCAA--GGAAGAGCCTCGGTCAAGAATTCTTGTTCGATTTCAACGGCTTCGGTAATGA 165523 Query 33529 TAAATCTAACGGTTTCTTCACTCGGTGGATGTAATAAATGTTTAAACATCAAACATGCGA 33588 | | |||| || || || | || | ||| || | | ||||||| Sbjct 165522 CATCTTGGACGGCTTGTTTGGATGGGCGGTGCTTGAGATGAGAGAATAGGAGGCATGCGA 165463 Query 33589 AATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCA 33648 ||||| ||| ||||| || || | || | |||||| || || |||||||| | || Sbjct 165462 AATCGGTGTGGAGACCTTCATCACGGGAGATGAGTTCGTTGGAGAAGGTGAGTCCAGCCA 165403 Query 33649 TTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTT 33708 | || ||||||||||| ||||| || || || || || ||||| || |||||||| |||| Sbjct 165402 TGAGACCACGCTTTTTGAGCCAGAAGATTGATGCAAAAGATCCAGAGAAGAAGATACCTT 165343 Query 33709 CTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGT---ATCCACT 33765 | || || || || |||| || | | || | | ||| | || | ||||| | Sbjct 165342 CAACAGCGGCGAATGCAACGAGACGTTGAGCAAAGGTAGAGCTCTTATCTTCAATCCATT 165283 Query 33766 TTTGAGCCCAATCGGCCTTCTTTTTTACACAAGG 33799 | ||||||||||||||| || || | ||||| Sbjct 165282 TGACAGCCCAATCGGCCTTTTTCTTAATGCAAGG 165249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629812695295440