Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20glacialis_20[genbank_20GCA_5F002162575.1_202017-05-31] 623 sequences; 41,098,534 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq3 125 7e-24 >seq3 Length=2126074 Score = 125 bits (138), Expect = 7e-24 Identities = 379/581 (65%), Gaps = 6/581 (1%) Strand=Plus/Plus Query 37966 AATCCTGGACATTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCC 38025 || || || ||||| || ||||| |||| ||||||| ||| ||||| || || | | Sbjct 691716 AAACCAGGGCATTCATTGGGGCACATAAGAGTCCATTCTCCATTCTTTTCGACACGCTTC 691775 Query 38026 ATAAATAAATCAGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATATTCTTCGTTC 38085 || || |||||||| | ||| || ||| || | ||| | | | |||||| || Sbjct 691776 ATGAACAAATCAGGAATCCACAAGGCATAGAAGAGATCGCGTGCGCGAACTTCTTCCTTA 691835 Query 38086 CCTACATTCTTTCTTAAGCTTAGAAAATCGAATATATCAGCGTGCCATGGTTCTATATAA 38145 || ||||| | || ||||| ||||| | ||| || |||||||| || | ||| Sbjct 691836 CCGTGGTTCTTGCGTAGATCAAGAAACTCGAAAACATCGGCATGCCATGGCTCAAGGTAA 691895 Query 38146 ATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTATTA 38205 | | | || || || | ||| | ||| ||||||| || |||||| | ||||| || Sbjct 691896 ACAGCAAAAGCACCCGGGCGTTTGTTACCACCCTGATCAACATATCTTGCAGTGTTGTTG 691955 Query 38206 TATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATATAAGTA 38265 | | || | ||| || || |||||||| || || || || |||||| || || | | Sbjct 691956 AAAACTCGAAGCATGGGAACAATACCATTGGAATTTCCATTAGTACCGGCGATGTATGCA 692015 Query 38266 CCCTTAGCTCGTATATTACTTATCGACAATCCTATTCCACCTGCATGTTTTGATATTAAA 38325 || |||| || || | || | || || ||||| |||| ||||| || | Sbjct 692016 CCAGTAGCACGGATTCTGTGAATGTTGAGACCAATACCACCGGCATTCTTTGAGATCATG 692075 Query 38326 GCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTATTGGTAGTATA 38385 || || || || ||||| | ||||| || ||||| || || || || || | || Sbjct 692076 GCACAAATCTTCAAAGTATCGTAGATACCATCAATACTATCCTCTTTCAT--GTCG-ATG 692132 Query 38386 A--AACAACTA-GACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCA 38442 | || || | || | ||| | |||||| || || ||| | || || || ||| Sbjct 692133 AGGAAGCACGACGAAAGTTGTGCTTGTGGAGTACCCGCAGAAAAGAGCGTTGGGGAAGCA 692192 Query 38443 TGTATGAACCATTTTTCCGACAAATAATTATATGTTTCTATTACATCATCTATATCACCG 38502 ||| | || | || | |||| | || |||||||| || || || |||||| | Sbjct 692193 TGTGTAAAGTACTTGTTTGACATCAAGTTGTATGTTTCGATAGCACTTTCGATATCATCA 692252 Query 38503 CCGTGAATACCTAGAGATACCCTCATTAGCATATGTTGTGG 38543 ||||||||||| | | || | ||| | ||| ||||| || Sbjct 692253 CCGTGAATACCCACGGCAACACGCATGATCATTTGTTGAGG 692293 Score = 91.5 bits (100), Expect = 1e-13 Identities = 155/222 (70%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849 ||||| ||||||| ||||| ||| || | | || | | ||| |||||||| || Sbjct 690531 TCAACGGTGAATTGAATAGGTGCTGAGGCAGCCATAGTACGTAAATAGTACATTCCGGTC 690590 Query 36850 TTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTAT-GTAGGATT 36908 || | |||||| ||||||| ||| |||||| || | | |||| || ||||||| Sbjct 690591 TTCAAACCCAATTTCCATCCAGCAAAGTGCATAGATGTGA-TCTTGCCCATTGTAGGATC 690649 Query 36909 ATCTATATATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCAT 36968 | || | || ||||||||||| |||||| ||||| ||||| | || || ||||| Sbjct 690650 CTTCATGTGAATGTTCATTGATTGAGATTGATCGATAAATGCACCGCGATCAGCAGCCAT 690709 Query 36969 TTCTAAAATACATTTTTGAGATATCTCCCAAACCGTTTTATA 37010 || | ||| | |||||| || |||||||| || || || Sbjct 690710 TTGAACAATTGTTCGTTGAGAAATTTCCCAAACAGTCTTGTA 690751 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468521151363120