Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20glacialis_20[genbank_20GCA_5F002162575.1_202017-05-31]
623 sequences; 41,098,534 total letters
Query= NC_003389.1
Length=146454
Score E
Sequences producing significant alignments: (Bits) Value
seq3 125 7e-24
>seq3
Length=2126074
Score = 125 bits (138), Expect = 7e-24
Identities = 379/581 (65%), Gaps = 6/581 (1%)
Strand=Plus/Plus
Query 37966 AATCCTGGACATTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCC 38025
|| || || ||||| || ||||| |||| ||||||| ||| ||||| || || | |
Sbjct 691716 AAACCAGGGCATTCATTGGGGCACATAAGAGTCCATTCTCCATTCTTTTCGACACGCTTC 691775
Query 38026 ATAAATAAATCAGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATATTCTTCGTTC 38085
|| || |||||||| | ||| || ||| || | ||| | | | |||||| ||
Sbjct 691776 ATGAACAAATCAGGAATCCACAAGGCATAGAAGAGATCGCGTGCGCGAACTTCTTCCTTA 691835
Query 38086 CCTACATTCTTTCTTAAGCTTAGAAAATCGAATATATCAGCGTGCCATGGTTCTATATAA 38145
|| ||||| | || ||||| ||||| | ||| || |||||||| || | |||
Sbjct 691836 CCGTGGTTCTTGCGTAGATCAAGAAACTCGAAAACATCGGCATGCCATGGCTCAAGGTAA 691895
Query 38146 ATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTATTA 38205
| | | || || || | ||| | ||| ||||||| || |||||| | ||||| ||
Sbjct 691896 ACAGCAAAAGCACCCGGGCGTTTGTTACCACCCTGATCAACATATCTTGCAGTGTTGTTG 691955
Query 38206 TATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATATAAGTA 38265
| | || | ||| || || |||||||| || || || || |||||| || || | |
Sbjct 691956 AAAACTCGAAGCATGGGAACAATACCATTGGAATTTCCATTAGTACCGGCGATGTATGCA 692015
Query 38266 CCCTTAGCTCGTATATTACTTATCGACAATCCTATTCCACCTGCATGTTTTGATATTAAA 38325
|| |||| || || | || | || || ||||| |||| ||||| || |
Sbjct 692016 CCAGTAGCACGGATTCTGTGAATGTTGAGACCAATACCACCGGCATTCTTTGAGATCATG 692075
Query 38326 GCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTATTGGTAGTATA 38385
|| || || || ||||| | ||||| || ||||| || || || || || | ||
Sbjct 692076 GCACAAATCTTCAAAGTATCGTAGATACCATCAATACTATCCTCTTTCAT--GTCG-ATG 692132
Query 38386 A--AACAACTA-GACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCA 38442
| || || | || | ||| | |||||| || || ||| | || || || |||
Sbjct 692133 AGGAAGCACGACGAAAGTTGTGCTTGTGGAGTACCCGCAGAAAAGAGCGTTGGGGAAGCA 692192
Query 38443 TGTATGAACCATTTTTCCGACAAATAATTATATGTTTCTATTACATCATCTATATCACCG 38502
||| | || | || | |||| | || |||||||| || || || |||||| |
Sbjct 692193 TGTGTAAAGTACTTGTTTGACATCAAGTTGTATGTTTCGATAGCACTTTCGATATCATCA 692252
Query 38503 CCGTGAATACCTAGAGATACCCTCATTAGCATATGTTGTGG 38543
||||||||||| | | || | ||| | ||| ||||| ||
Sbjct 692253 CCGTGAATACCCACGGCAACACGCATGATCATTTGTTGAGG 692293
Score = 91.5 bits (100), Expect = 1e-13
Identities = 155/222 (70%), Gaps = 2/222 (1%)
Strand=Plus/Plus
Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849
||||| ||||||| ||||| ||| || | | || | | ||| |||||||| ||
Sbjct 690531 TCAACGGTGAATTGAATAGGTGCTGAGGCAGCCATAGTACGTAAATAGTACATTCCGGTC 690590
Query 36850 TTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTAT-GTAGGATT 36908
|| | |||||| ||||||| ||| |||||| || | | |||| || |||||||
Sbjct 690591 TTCAAACCCAATTTCCATCCAGCAAAGTGCATAGATGTGA-TCTTGCCCATTGTAGGATC 690649
Query 36909 ATCTATATATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCAT 36968
| || | || ||||||||||| |||||| ||||| ||||| | || || |||||
Sbjct 690650 CTTCATGTGAATGTTCATTGATTGAGATTGATCGATAAATGCACCGCGATCAGCAGCCAT 690709
Query 36969 TTCTAAAATACATTTTTGAGATATCTCCCAAACCGTTTTATA 37010
|| | ||| | |||||| || |||||||| || || ||
Sbjct 690710 TTGAACAATTGTTCGTTGAGAAATTTCCCAAACAGTCTTGTA 690751
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 468521151363120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |