Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20glacialis_20[genbank_20GCA_5F002162575.1_202017-05-31] 623 sequences; 41,098,534 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq3 282 6e-71 seq9 123 3e-23 >seq3 Length=2126074 Score = 282 bits (312), Expect = 6e-71 Identities = 1319/2067 (64%), Gaps = 53/2067 (3%) Strand=Plus/Plus Query 64839 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 64898 ||||||||||| || || || || | | ||||||| |||||||||||| || || | | Sbjct 690537 GTGAATTGAATAGGTGCTGAGGCAGCCATAGTACGTAAATAGTACATTCCGGTCTTCAAA 690596 Query 64899 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 64958 || | ||||||| ||| |||||| || | ||| | ||||| || Sbjct 690597 CCCAATTTCCATCCAGCAAAGTGCATAGATGTGATCTTGCCCATTGTAGGATCCTTCATG 690656 Query 64959 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 65018 || || ||||| |||||| ||||||||| || || || | || |||||||||| | Sbjct 690657 TGAATGTTCATTGATTGAGATTGATCGATAAATGCACCGCGATCAGCAGCCATTTGAACA 690716 Query 65019 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 65078 || || ||| | ||||||||||| ||| || |||| ||| || || |||||| | Sbjct 690717 ATTGTTCGTTGAGAAATTTCCCAAACAGTCTTGTAAAGGGCCTTGATGTCAGCTGGAATG 690776 Query 65079 TTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTC 65135 || | | || ||||| ||||||||||| || || || | ||||| || | ||| | Sbjct 690777 TTGGGGATGTTTTGAATAGATCCACCATCAGCAATGATACGGTTCTTCATGTTGTCAGAC 690836 Query 65136 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCA 65195 || | | || | || | ||||| || ||||| ||||| |||||||| Sbjct 690837 CAAAGACCCATATCAACAAGGTCTTTGAGGAGCCATGGGTTAACAACTTGGAATTCTCCG 690896 Query 65196 GACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCC 65255 | || || | || | ||| || || || || ||||| | | | || || || Sbjct 690897 GCCAGAACACGACGTGAGTAGATGTTTGAAGTGTATGGTTCAAAACATTCGTTGAAACCG 690956 Query 65256 AAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCG 65315 | ||||| | ||| ||||| ||||||||||| || | | | || | || ||| Sbjct 690957 AGGATTTGTGAAGTGCTAGCAGTAGGCATAGGTGCAACAAGAAGAGAGTTGCGAATTCCG 691016 Query 65316 TATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNN 65375 | | |||| | || | || ||||||| ||| | ||| || || || Sbjct 691017 TGTTGCTTGATGGATTGCTTCAAAGAGTCCCAATCCCACAAATCAGAAGGAGTGACGCCC 691076 Query 65376 NNNNNNNNNNNTTGTAGAATACCGTT----ACTGGCGTACGATCCTACATATGTATCGTA 65431 ||| || ||| || ||||| | | ||| || || ||||| Sbjct 691077 CACATGTCATATTGGAGTTCACCCTTGGAGACTGGAG----AGCCTTGGTAAGTTTCGTA 691132 Query 65432 TGGTCC---TTCCTTCTC-AGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGG 65487 || || |||||| | | || | ||| | || || ||| ||| || |||| Sbjct 691133 CGGGCCAAGTTCCTTTGCGATCTCG---ACAGATGAGGTC-AAGGCAGCGTGGTAGATGG 691188 Query 65488 TTTCGAAGATCTTCTTATTTAGAT-CTTGTGCTTCCAGGCTA-TCAAATGGATAATTTAA 65545 | || || |||| | || || | |||| ||||| ||| | || |||||| | || Sbjct 691189 TCTCAAAAATCTGGATGTTGAGGTGCTTG-GCTTCT-GGCGAGTCGAATGGAAGACG-AA 691245 Query 65546 GAG--AATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTA 65603 ||| || ||| || || || | ||||||||||||| | ||||||||| ||| | | Sbjct 691246 GAGCCAAGAAA-GCATCAGCAAGACCTTGAACACCAACAGCGATAGGTCGATGACGGAAA 691304 Query 65604 TTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTT 65663 || || |||||| | | |||||||| || ||||| || || || || | ||| Sbjct 691305 TTGCTCCTTCTGGCTTCTTGTACTGGATAATAGTTGATATCAATGATCTTGTTCAAGTTT 691364 Query 65664 CTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA---TCGCTCATCTATT 65720 || || | |||| ||| || || | || || | |||||| | || ||||| || Sbjct 691365 CTAACGACCACTTGGACAACCTCGTGAAGCTTTTGGAAATCATAAGTTCCCTCATTCATG 691424 Query 65721 ---AC-AAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATC 65776 || ||| || | | |||| || |||| ||||| || ||||||| | | Sbjct 691425 TTGACGAAAGTTGGTAGA-GCAATTGAAGCCAAGTTACAGCAAGCAACCTCATCTGGTGC 691483 Query 65777 CGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTG 65836 | || | | ||||| ||||| | || | || || || | || | ||| Sbjct 691484 AGAGTACTCGACGATCTCTGTGCACAAGTTGGAGCTGCGAATAGTACCAAGGTTCTTTTG 691543 Query 65837 ATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTG 65896 || ||||| ||||| || ||||| || ||||| ||||| ||| | || ||||| | || Sbjct 691544 GTTGCTCTTCTTGTTGCATGCATCTTTGTAAAGCATGAAAGGATTTCCGGTTTCGGTTTG 691603 Query 65897 AGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCTTTTC 65956 || || | ||| | | ||||| | ||||||| || || ||| | |||| | Sbjct 691604 AGCCTCAAGAATAGAGTACCAGAGCTTTTGAGCCTTGAT---AGTCTTGCGACCCTTTCC 691660 Query 65957 TC---TTTCGTATAGTGTA-TACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATC 66012 | |||| || | | | || | || ||||| || || |||||| |||| | Sbjct 691661 TGCCTTTTCATA-ACTCTCGTAGAGGGCCTCAAACTCCTCGCCATAAACATCTGCCAAAC 691719 Query 66013 CAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAA 66072 |||| ||||||| || ||||| | | ||| ||||| | | | || || ||||| | Sbjct 691720 CAGGGCATTCATTGGGGCACATAAGAGTCCATTCTCCATTCTTTTCGACACGCTTCATGA 691779 Query 66073 AGAGATCAGGAATCCAAAGAGCTATA-AATAAATCTCTGGTTCTATGTTCCTCGTTTCCT 66131 | | |||||||||||| | || ||| || | ||| | | | | ||| || || || Sbjct 691780 ACAAATCAGGAATCCACAAGGC-ATAGAAGAGATCGCGTGCGCGAACTTCTTCCTTACCG 691838 Query 66132 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATG 66191 ||||| ||||| || ||| | | || ||| |||||| || || | ||| | Sbjct 691839 TGGTTCTTGCGTAGATCAAGAAACTCGAAAACATCGGCATGCCATGGCTCAAGGTAAACA 691898 Query 66192 GCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 66251 || | | | || || |||||||| || |||||||| | ||||| || ||||| || || Sbjct 691899 GCAAAAGCACCCGGGCGTTTGTTACCACCCTGATCAACATATCTTGCAGTGTTGTTGAAA 691958 Query 66252 ACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCA 66311 |||| | ||| |||| |||||||||||| | ||||| || |||| ||| || ||| Sbjct 691959 ACTCGAAGCATGGGAACAATACCATTGGAATTTCCATTAGTACCGGCGATGTATGCACCA 692018 Query 66312 CTTGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCG 66371 | ||||| || | ||| ||||| || || || || | || ||||| | || Sbjct 692019 GTAGCACGGATTCTGTGAATGTTGAGACCAATACCACCGGCATTCTTTGAGATCATGGCA 692078 Query 66372 CATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAA 66431 || || || ||||| ||||| || || |||||||| || |||||| | || || Sbjct 692079 CAAATCTTCAAAGTATCGTAGATACCATCAATACTATCCTCTTTCATGTCGATGAGGAAG 692138 Query 66432 CAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTA 66491 || || | ||| | ||| |||||| ||| | || || ||||| || ||| Sbjct 692139 CACGACGAAAGTTGTGCTTGTGGAGTACCCGCAGAAAAGAGCGTTGGGGAAGCATGTGTA 692198 Query 66492 AACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC-CCATTGATG 66550 || | || | || | | ||||| || || ||||| || ||||| || | || Sbjct 692199 AAGTACTTGTTTGACATCAAGTTGTATGTTTCGATAGCACTTTCGATATCATCACCG-TG 692257 Query 66551 AATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTAT 66610 ||| || || || |||||||| | ||| || ||||| | || | | || | | Sbjct 692258 AATACCCACGGCAACACGCATGATCATTTGTTGAGGACGCTCCGCAACTTTACCATCAAG 692317 Query 66611 TTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCT 66668 || | || ||| || | || || || || || || | ||| ||||| || Sbjct 692318 ACGTAAAAGATATGATCGCTCAAGGGTCTTGAACCCGAAGTATTGGTAGTTGAAA--TCC 692375 Query 66669 CGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATGGTA 66728 || || || | |||| | |||||||||| |||| || | | | || || | || Sbjct 692376 CGGTCATAGACAATAGCAGAGTTGAGTTCTTCCTCATGTCTCATGACGCATTCGAAAGT- 692434 Query 66729 ATACTTG-AAATAATCGGAGAATGTTTCCCATTTTTAGGATTGACATAGTTGAATAAATC 66787 | |||| ||| || |||||| ||| |||||||| || || ||| | | ||||||| Sbjct 692435 TTCCTTGCTAATCATAGGAGAAGCTTTGCCATTTTTTGGGTTTGTATATTGGTATAAATC 692494 Query 66788 CTCCATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCT 66847 || || | || | || || |||| |||||| || |||||||| || || | Sbjct 692495 GCGGATAACGTGGGAGAACTGCTTCTTGGTTTGTTTGTGGAGGTTTGATACTGCAATACG 692554 Query 66848 AGCGGCTATAATGGCATAATCCGGATG 66874 ||| |||| |||||||||||| ||||| Sbjct 692555 AGCAGCTAGAATGGCATAATCGGGATG 692581 >seq9 Length=1212739 Score = 123 bits (136), Expect = 3e-23 Identities = 289/436 (66%), Gaps = 0/436 (0%) Strand=Plus/Minus Query 35867 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTT 35926 |||||||| || || || | || ||||| || || || || || | || || || || Sbjct 165760 TTTTGGTAATCTCCAACTCTCTTCTCGAAGAAGTTGGTCTTGCCAGCCAAGGAGATGTTC 165701 Query 35927 TCCATGAAATCGAATGGATTGATAACATTATAAAtttttttAAATCCCAATTCAGAAATC 35986 |||||||| |||||||| ||| | || || | ||| | ||||| || | | Sbjct 165700 TCCATGAAGTCGAATGGGTTGGCAGACTTGTAGACTTTGTCGTTACCCAAAGCAACCAGC 165641 Query 35987 AATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 36046 | | ||| ||||| || || || ||| ||||| | | | ||||| |||| ||| Sbjct 165640 AGACGATCAGCGACGAACTCAATGTATTGCTTCATGAGAGTAGAGTTCATGCCTAAAAGA 165581 Query 36047 TTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATA 36106 ||||||||| | || | ||||||||||| || || || || || || | | Sbjct 165580 GAGCAAGGAAGAGCCTCGGTCAAGAATTCTTGTTCGATTTCAACGGCTTCGGTAATGACA 165521 Query 36107 GATATTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAAA 36166 | || | || || || | | | | ||| || | | ||||||||| Sbjct 165520 TCTTGGACGGCTTGTTTGGATGGGCGGTGCTTGAGATGAGAGAATAGGAGGCATGCGAAA 165461 Query 36167 TCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATT 36226 ||| ||| ||||| || || | || | ||||||||| || |||||||| | ||| Sbjct 165460 TCGGTGTGGAGACCTTCATCACGGGAGATGAGTTCGTTGGAGAAGGTGAGTCCAGCCATG 165401 Query 36227 AGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCT 36286 || ||||||||||| ||||| || || || ||||| |||||||| ||||| || ||||| Sbjct 165400 AGACCACGCTTTTTGAGCCAGAAGATTGATGCAAAAGATCCAGAGAAGAAGATACCTTCA 165341 Query 36287 ACTGCCGCAAAGGCAA 36302 || || || || |||| Sbjct 165340 ACAGCGGCGAATGCAA 165325 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658167674479320