Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20glacialis_20[genbank_20GCA_5F002162575.1_202017-05-31]
623 sequences; 41,098,534 total letters
Query= NC_004062.1
Length=119217
Score E
Sequences producing significant alignments: (Bits) Value
seq34 98.7 8e-16
seq18 84.2 2e-11
>seq34
Length=376069
Score = 98.7 bits (108), Expect = 8e-16
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942
|| ||||| || | ||||||||| || | |||| ||||||||| | ||||| |||||
Sbjct 166305 CCACCACGGAGACGTAACACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAA 166364
Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002
| || || | || || | ||| || ||||| || |||||||||||||| |||| ||
Sbjct 166365 AGGGTGCGGCCATCCTCGAGTTGCTTTCCGGCGAAGATCAATCGCTGTTGGTCGGGTGGA 166424
Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062
| || || || || |||| | ||||| || | | ||||| || ||| ||
Sbjct 166425 ATTCCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTGTCCGAAGACTCAACC 166484
Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109
|| | || |||||||| || || || || || || || || |||||
Sbjct 166485 TCGAGGGTGATAGTTTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 166531
>seq18
Length=877782
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942
|| ||||| || | | |||||| || | ||||| |||||||| | |||||||| |
Sbjct 575122 CCACCACGAAGACGGAGCACCAAGTGCAAGGTGCTTTCCTTTTGAATGTTGTAATCCAAA 575181
Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002
| || | |||| ||||| || || || || || ||||||||||||||||| | ||
Sbjct 575182 AGAGTTCTGCCGTCCTCCAACTGCTTTCCAGCGAAGATCAATCGCTGTTGATCAGGTGGA 575241
Query 43003 ACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061
| || || || || ||| ||| | ||||| | ||| || || || || ||
Sbjct 575242 ATGCCCTCCTTATC-CTGAATCTTAGCCTTGACATTATCAATAGTATCCGAAGATTCTAC 575300
Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109
|||| || ||||| ||||| || | || || ||||| ||||||||
Sbjct 575301 CTCTAATGTGATAGTCTTTCCAGTCAAGGTCTTAACAAAGATTTGCAT 575348
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 381366704332134
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |