Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20glacialis_20[genbank_20GCA_5F002162575.1_202017-05-31] 623 sequences; 41,098,534 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq34 98.7 8e-16 seq18 84.2 2e-11 >seq34 Length=376069 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | ||||||||| || | |||| ||||||||| | ||||| ||||| Sbjct 166305 CCACCACGGAGACGTAACACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAA 166364 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || || | || || | ||| || ||||| || |||||||||||||| |||| || Sbjct 166365 AGGGTGCGGCCATCCTCGAGTTGCTTTCCGGCGAAGATCAATCGCTGTTGGTCGGGTGGA 166424 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | || || || || |||| | ||||| || | | ||||| || ||| || Sbjct 166425 ATTCCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTGTCCGAAGACTCAACC 166484 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || |||||||| || || || || || || || || ||||| Sbjct 166485 TCGAGGGTGATAGTTTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 166531 >seq18 Length=877782 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | | |||||| || | ||||| |||||||| | |||||||| | Sbjct 575122 CCACCACGAAGACGGAGCACCAAGTGCAAGGTGCTTTCCTTTTGAATGTTGTAATCCAAA 575181 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || | |||| ||||| || || || || || ||||||||||||||||| | || Sbjct 575182 AGAGTTCTGCCGTCCTCCAACTGCTTTCCAGCGAAGATCAATCGCTGTTGATCAGGTGGA 575241 Query 43003 ACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | || || || || ||| ||| | ||||| | ||| || || || || || Sbjct 575242 ATGCCCTCCTTATC-CTGAATCTTAGCCTTGACATTATCAATAGTATCCGAAGATTCTAC 575300 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 |||| || ||||| ||||| || | || || ||||| |||||||| Sbjct 575301 CTCTAATGTGATAGTCTTTCCAGTCAAGGTCTTAACAAAGATTTGCAT 575348 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381366704332134