Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20glacialis_20[genbank_20GCA_5F002162575.1_202017-05-31] 623 sequences; 41,098,534 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq3 226 4e-54 seq9 140 4e-28 >seq3 Length=2126074 Score = 226 bits (250), Expect = 4e-54 Identities = 916/1415 (65%), Gaps = 36/1415 (3%) Strand=Plus/Plus Query 71443 TAAATGGTTTCGAAAATCTTCTTATTGAGAT-CTTGTGCTTCCGGGCTATCAAATGGATA 71501 || ||||| || ||||||| | ||||| | |||| ||||| || || |||||| Sbjct 691182 TAGATGGTCTCAAAAATCTGGATGTTGAGGTGCTTG-GCTTCTGGCGAGTCGAATGGAAG 691240 Query 71502 ATTTAAGAG--AATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGT 71559 | ||||| || ||| || || || | |||||||| |||| | ||||||||| || Sbjct 691241 ACG-AAGAGCCAAGAAA-GCATCAGCAAGACCTTGAACACCAACAGCGATAGGTCGATGA 691298 Query 71560 CTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTG 71619 | ||| || |||||| | | |||||||| || ||||| || || || || Sbjct 691299 CGGAAATTGCTCCTTCTGGCTTCTTGTACTGGATAATAGTTGATATCAATGATCTTGTTC 691358 Query 71620 AGATTTCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAA---TCTCCCA 71676 | ||||| || | |||| ||| || || | || || | |||||| | || | || Sbjct 691359 AAGTTTCTAACGACCACTTGGACAACCTCGTGAAGCTTTTGGAAATCATAAGTTCCCTCA 691418 Query 71677 TCTAT-TACAAACACGTTCA-AG-GCAACAGATGCCAGATTACAAACGGCTACCTCATTA 71733 | || | | | ||| || |||| || |||| ||||| || ||||||| Sbjct 691419 TTCATGTTGACGAAAGTTGGTAGAGCAATTGAAGCCAAGTTACAGCAAGCAACCTCATCT 691478 Query 71734 GCATCGGCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTT 71793 | | | || | | || || ||||| | || | || || || | || Sbjct 691479 GGTGCAGAGTACTCGACGATCTCTGTGCACAAGTTGGAGCTGCGAATAGTACCAAGGTTC 691538 Query 71794 TGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCA 71853 | ||| || ||||| ||||| || ||||| || ||||| || || ||| | || ||||| Sbjct 691539 TTTTGGTTGCTCTTCTTGTTGCATGCATCTTTGTAAAGCATGAAAGGATTTCCGGTTTCG 691598 Query 71854 ATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATATTCTTGTATCTC 71913 | |||| || | ||| | | ||||| | ||||||| || | ||||| | | Sbjct 691599 GTTTGAGCCTCAAGAATAGAGTACCAGAGCTTTTGAGCCTTGAT---AGTCTTGCGACCC 691655 Query 71914 TTTTCTC---TTTCGTAT-TGT-GTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGT 71968 ||| || |||| || | | ||| | | || ||||| || || || ||| Sbjct 691656 TTTCCTGCCTTTTCATAACTCTCGTAGAGGGCC--TCAAACTCCTCGCCATAAACATCTG 691713 Query 71969 CTAATCCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTT--ACTCG 72026 | || ||||| |||||||| || ||||| | | ||| ||||||| || ||| || || Sbjct 691714 CCAAACCAGGGCATTCATTGGGGCACATAAGAGTCCATTCTCCAT--TCTTTTCGACACG 691771 Query 72027 TTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGCTCCT 72085 ||||| || | |||||||||||| | || ||| || ||||| | | | | || | Sbjct 691772 CTTCATGAACAAATCAGGAATCCACAAGGC-ATAGAAGAGATCGCGTGCGCGAACTTCTT 691830 Query 72086 CGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCA 72145 | || || ||||| ||||| || ||| | | || ||| | |||||| || || | Sbjct 691831 CCTTACCGTGGTTCTTGCGTAGATCAAGAAACTCGAAAACATCGGCATGCCATGGCTCAA 691890 Query 72146 AGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGT 72205 ||| | || | | | ||||| |||||||| || |||||||| | ||||| || |||| Sbjct 691891 GGTAAACAGCAAAAGCACCCGGGCGTTTGTTACCACCCTGATCAACATATCTTGCAGTGT 691950 Query 72206 TATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATAT 72265 | || |||||| | ||| |||| |||||||||||| ||||| || |||| ||| | Sbjct 691951 TGTTGAAAACTCGAAGCATGGGAACAATACCATTGGAATTTCCATTAGTACCGGCGATGT 692010 Query 72266 AGCTTCCACTGGCACGAATATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGA 72325 | ||| | ||||| || || ||| ||||| || || || || | || |||| Sbjct 692011 ATGCACCAGTAGCACGGATTCTGTGAATGTTGAGACCAATACCACCGGCATTCTTTGAGA 692070 Query 72326 TTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAA 72385 | | || || || || ||||| ||||| || || |||||||| || |||||| | Sbjct 692071 TCATGGCACAAATCTTCAAAGTATCGTAGATACCATCAATACTATCCTCTTTCATGTCGA 692130 Query 72386 GTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAG 72445 || || || || | ||| | ||| |||||| ||| | || || |||| Sbjct 692131 TGAGGAAGCACGACGAAAGTTGTGCTTGTGGAGTACCCGCAGAAAAGAGCGTTGGGGAAG 692190 Query 72446 CGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATC-C 72504 | || ||||| | || | |||| | ||||| || || ||||| ||| ||||| Sbjct 692191 CATGTGTAAAGTACTTGTTTGACATCAAGTTGTATGTTTCGATAGCACTTTCGATATCAT 692250 Query 72505 CATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTG 72564 || | || || || || || |||||||| | ||| || ||||| | || | | || Sbjct 692251 CACCG-TGAATACCCACGGCAACACGCATGATCATTTGTTGAGGACGCTCCGCAACTTTA 692309 Query 72565 TTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TG 72622 || | || | || ||| || | || || || || || || | ||| || Sbjct 692310 CCATCAAGACGTAAAAGATATGATCGCTCAAGGGTCTTGAACCCGAAGTATTGGTAGTTG 692369 Query 72623 AAAAGTCTCGTTCGTAAATAATAACCGAATTGAGTTTATCCTTATATTTGTTAACTATAT 72682 ||| || || || || | |||| | || ||||||| |||| || | | | || | Sbjct 692370 AAA--TCCCGGTCATAGACAATAGCAGAGTTGAGTTCTTCCTCATGTCTCATGACGCATT 692427 Query 72683 CCATGGTGATACTTG-AAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTG 72741 | | || | |||| ||| || |||||| ||| |||||||| || || ||| | | Sbjct 692428 CGAAAGT-TTCCTTGCTAATCATAGGAGAAGCTTTGCCATTTTTTGGGTTTGTATATTGG 692486 Query 72742 AATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACG 72801 ||||||| || || | || | || || |||| ||||| || |||||||| Sbjct 692487 TATAAATCGCGGATAACGTGGGAGAACTGCTTCTTGGTTTGTTTGTGGAGGTTTGATACT 692546 Query 72802 GCTATTCTGGCGGCTAGAATGGCATAATCTGGATG 72836 || || | || ||||||||||||||||| ||||| Sbjct 692547 GCAATACGAGCAGCTAGAATGGCATAATCGGGATG 692581 Score = 125 bits (138), Expect = 1e-23 Identities = 305/459 (66%), Gaps = 5/459 (1%) Strand=Plus/Plus Query 70801 GTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATGCCTGTTTTTAGA 70860 || || ||||| || | || || || | ||||||| ||||||||| || || || | | Sbjct 690537 GTGAATTGAATAGGTGCTGAGGCAGCCATAGTACGTAAATAGTACATTCCGGTCTTCAAA 690596 Query 70861 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGA-ATAGCTAGGATCGGCTAT 70919 || | ||||||| ||| |||||| || | ||| || | ||||||| || Sbjct 690597 CCCAATTTCCATCCAGCAAAGTGCATAGATGTGATCTTGCCCATTG-TAGGATCCTTCAT 690655 Query 70920 GTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTAT 70979 |||||| ||||| || ||| ||||||||| || || || | || |||||||||| | Sbjct 690656 GTGAATGTTCATTGATTGAGATTGATCGATAAATGCACCGCGATCAGCAGCCATTTGAAC 690715 Query 70980 GATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAG 71039 || || ||| | ||||||||||| ||| || |||| ||| || || |||||| Sbjct 690716 AATTGTTCGTTGAGAAATTTCCCAAACAGTCTTGTAAAGGGCCTTGATGTCAGCTGGAAT 690775 Query 71040 GTTTG---TATTCTGAATGGATCCACCATCTGCAATAATCCTATTTTTGATCTCTTCATT 71096 ||| | | || ||||| ||||||||||| ||||| || | || || || | ||| Sbjct 690776 GTTGGGGATGTTTTGAATAGATCCACCATCAGCAATGATACGGTTCTTCATGTTGTCAGA 690835 Query 71097 CCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTTGAAATTCTCC 71156 ||| | | || | || | ||||| || ||||| ||||| |||||||| Sbjct 690836 CCAAAGACCCATATCAACAAGGTCTTTGAGGAGCCATGGGTTAACAACTTGGAATTCTCC 690895 Query 71157 AGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACTGACTCATTATTTCC 71216 | || || | ||| | ||| || || || || ||||| | | || || || Sbjct 690896 GGCCAGAACACGACGTGAGTAGATGTTTGAAGTGTATGGTTCAAAACATTCGTTGAAACC 690955 Query 71217 CAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCAC 71255 | ||||| | ||| ||||| ||||||||||| || Sbjct 690956 GAGGATTTGTGAAGTGCTAGCAGTAGGCATAGGTGCAAC 690994 >seq9 Length=1212739 Score = 140 bits (154), Expect = 4e-28 Identities = 295/438 (67%), Gaps = 4/438 (1%) Strand=Plus/Minus Query 41774 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTT 41833 |||||||| || || || | || ||||| || || ||||| || |||| || || || Sbjct 165760 TTTTGGTAATCTCCAACTCTCTTCTCGAAGAAGTTGGTCTTGCCAGCCAAGGAGATGTTC 165701 Query 41834 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 41893 |||||||| || || || |||| | || || | ||| | ||||| || | | Sbjct 165700 TCCATGAAGTCGAATGGGTTGGCAGACTTGTAGACTTTGTCGTTACCCAAAGCAACCAGC 165641 Query 41894 AATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 41953 | | ||| |||| ||| || || ||| ||||| | | | ||||| |||| ||| Sbjct 165640 AGACGATCAGCGACGAACTCAATGTATTGCTTCATGAGAGTAGAGTTCATGCCTAAAAGA 165581 Query 41954 TTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATA 42013 ||||||||| | || | ||||||||||| || || || || || || | | Sbjct 165580 GAGCAAGGAAGAGCCTCGGTCAAGAATTCTTGTTCGATTTCAACGGCTTCGGTAATGACA 165521 Query 42014 GATCTT--ACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGA 42071 |||| || | || || || | | | | ||| || | | ||||||| Sbjct 165520 --TCTTGGACGGCTTGTTTGGATGGGCGGTGCTTGAGATGAGAGAATAGGAGGCATGCGA 165463 Query 42072 AATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCA 42131 ||||| ||| ||||| ||||| | || | ||||||||| || |||||||| | || Sbjct 165462 AATCGGTGTGGAGACCTTCATCACGGGAGATGAGTTCGTTGGAGAAGGTGAGTCCAGCCA 165403 Query 42132 TTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTT 42191 | || ||||||||||| ||||| || || || ||||| |||||||| |||||||| |||| Sbjct 165402 TGAGACCACGCTTTTTGAGCCAGAAGATTGATGCAAAAGATCCAGAGAAGAAGATACCTT 165343 Query 42192 CTACTGCCGCAAAGGCAA 42209 | || || || || |||| Sbjct 165342 CAACAGCGGCGAATGCAA 165325 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671133973503480