Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20glacialis_20[genbank_20GCA_5F002162575.1_202017-05-31]
623 sequences; 41,098,534 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq3 226 4e-54
seq9 140 4e-28
>seq3
Length=2126074
Score = 226 bits (250), Expect = 4e-54
Identities = 916/1415 (65%), Gaps = 36/1415 (3%)
Strand=Plus/Plus
Query 71443 TAAATGGTTTCGAAAATCTTCTTATTGAGAT-CTTGTGCTTCCGGGCTATCAAATGGATA 71501
|| ||||| || ||||||| | ||||| | |||| ||||| || || ||||||
Sbjct 691182 TAGATGGTCTCAAAAATCTGGATGTTGAGGTGCTTG-GCTTCTGGCGAGTCGAATGGAAG 691240
Query 71502 ATTTAAGAG--AATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGT 71559
| ||||| || ||| || || || | |||||||| |||| | ||||||||| ||
Sbjct 691241 ACG-AAGAGCCAAGAAA-GCATCAGCAAGACCTTGAACACCAACAGCGATAGGTCGATGA 691298
Query 71560 CTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTG 71619
| ||| || |||||| | | |||||||| || ||||| || || || ||
Sbjct 691299 CGGAAATTGCTCCTTCTGGCTTCTTGTACTGGATAATAGTTGATATCAATGATCTTGTTC 691358
Query 71620 AGATTTCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAA---TCTCCCA 71676
| ||||| || | |||| ||| || || | || || | |||||| | || | ||
Sbjct 691359 AAGTTTCTAACGACCACTTGGACAACCTCGTGAAGCTTTTGGAAATCATAAGTTCCCTCA 691418
Query 71677 TCTAT-TACAAACACGTTCA-AG-GCAACAGATGCCAGATTACAAACGGCTACCTCATTA 71733
| || | | | ||| || |||| || |||| ||||| || |||||||
Sbjct 691419 TTCATGTTGACGAAAGTTGGTAGAGCAATTGAAGCCAAGTTACAGCAAGCAACCTCATCT 691478
Query 71734 GCATCGGCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTT 71793
| | | || | | || || ||||| | || | || || || | ||
Sbjct 691479 GGTGCAGAGTACTCGACGATCTCTGTGCACAAGTTGGAGCTGCGAATAGTACCAAGGTTC 691538
Query 71794 TGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCA 71853
| ||| || ||||| ||||| || ||||| || ||||| || || ||| | || |||||
Sbjct 691539 TTTTGGTTGCTCTTCTTGTTGCATGCATCTTTGTAAAGCATGAAAGGATTTCCGGTTTCG 691598
Query 71854 ATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATATTCTTGTATCTC 71913
| |||| || | ||| | | ||||| | ||||||| || | ||||| | |
Sbjct 691599 GTTTGAGCCTCAAGAATAGAGTACCAGAGCTTTTGAGCCTTGAT---AGTCTTGCGACCC 691655
Query 71914 TTTTCTC---TTTCGTAT-TGT-GTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGT 71968
||| || |||| || | | ||| | | || ||||| || || || |||
Sbjct 691656 TTTCCTGCCTTTTCATAACTCTCGTAGAGGGCC--TCAAACTCCTCGCCATAAACATCTG 691713
Query 71969 CTAATCCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTT--ACTCG 72026
| || ||||| |||||||| || ||||| | | ||| ||||||| || ||| || ||
Sbjct 691714 CCAAACCAGGGCATTCATTGGGGCACATAAGAGTCCATTCTCCAT--TCTTTTCGACACG 691771
Query 72027 TTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGCTCCT 72085
||||| || | |||||||||||| | || ||| || ||||| | | | | || |
Sbjct 691772 CTTCATGAACAAATCAGGAATCCACAAGGC-ATAGAAGAGATCGCGTGCGCGAACTTCTT 691830
Query 72086 CGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCA 72145
| || || ||||| ||||| || ||| | | || ||| | |||||| || || |
Sbjct 691831 CCTTACCGTGGTTCTTGCGTAGATCAAGAAACTCGAAAACATCGGCATGCCATGGCTCAA 691890
Query 72146 AGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGT 72205
||| | || | | | ||||| |||||||| || |||||||| | ||||| || ||||
Sbjct 691891 GGTAAACAGCAAAAGCACCCGGGCGTTTGTTACCACCCTGATCAACATATCTTGCAGTGT 691950
Query 72206 TATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATAT 72265
| || |||||| | ||| |||| |||||||||||| ||||| || |||| ||| |
Sbjct 691951 TGTTGAAAACTCGAAGCATGGGAACAATACCATTGGAATTTCCATTAGTACCGGCGATGT 692010
Query 72266 AGCTTCCACTGGCACGAATATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGA 72325
| ||| | ||||| || || ||| ||||| || || || || | || ||||
Sbjct 692011 ATGCACCAGTAGCACGGATTCTGTGAATGTTGAGACCAATACCACCGGCATTCTTTGAGA 692070
Query 72326 TTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAA 72385
| | || || || || ||||| ||||| || || |||||||| || |||||| |
Sbjct 692071 TCATGGCACAAATCTTCAAAGTATCGTAGATACCATCAATACTATCCTCTTTCATGTCGA 692130
Query 72386 GTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAG 72445
|| || || || | ||| | ||| |||||| ||| | || || ||||
Sbjct 692131 TGAGGAAGCACGACGAAAGTTGTGCTTGTGGAGTACCCGCAGAAAAGAGCGTTGGGGAAG 692190
Query 72446 CGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATC-C 72504
| || ||||| | || | |||| | ||||| || || ||||| ||| |||||
Sbjct 692191 CATGTGTAAAGTACTTGTTTGACATCAAGTTGTATGTTTCGATAGCACTTTCGATATCAT 692250
Query 72505 CATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTG 72564
|| | || || || || || |||||||| | ||| || ||||| | || | | ||
Sbjct 692251 CACCG-TGAATACCCACGGCAACACGCATGATCATTTGTTGAGGACGCTCCGCAACTTTA 692309
Query 72565 TTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TG 72622
|| | || | || ||| || | || || || || || || | ||| ||
Sbjct 692310 CCATCAAGACGTAAAAGATATGATCGCTCAAGGGTCTTGAACCCGAAGTATTGGTAGTTG 692369
Query 72623 AAAAGTCTCGTTCGTAAATAATAACCGAATTGAGTTTATCCTTATATTTGTTAACTATAT 72682
||| || || || || | |||| | || ||||||| |||| || | | | || |
Sbjct 692370 AAA--TCCCGGTCATAGACAATAGCAGAGTTGAGTTCTTCCTCATGTCTCATGACGCATT 692427
Query 72683 CCATGGTGATACTTG-AAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTG 72741
| | || | |||| ||| || |||||| ||| |||||||| || || ||| | |
Sbjct 692428 CGAAAGT-TTCCTTGCTAATCATAGGAGAAGCTTTGCCATTTTTTGGGTTTGTATATTGG 692486
Query 72742 AATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACG 72801
||||||| || || | || | || || |||| ||||| || ||||||||
Sbjct 692487 TATAAATCGCGGATAACGTGGGAGAACTGCTTCTTGGTTTGTTTGTGGAGGTTTGATACT 692546
Query 72802 GCTATTCTGGCGGCTAGAATGGCATAATCTGGATG 72836
|| || | || ||||||||||||||||| |||||
Sbjct 692547 GCAATACGAGCAGCTAGAATGGCATAATCGGGATG 692581
Score = 125 bits (138), Expect = 1e-23
Identities = 305/459 (66%), Gaps = 5/459 (1%)
Strand=Plus/Plus
Query 70801 GTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATGCCTGTTTTTAGA 70860
|| || ||||| || | || || || | ||||||| ||||||||| || || || | |
Sbjct 690537 GTGAATTGAATAGGTGCTGAGGCAGCCATAGTACGTAAATAGTACATTCCGGTCTTCAAA 690596
Query 70861 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGA-ATAGCTAGGATCGGCTAT 70919
|| | ||||||| ||| |||||| || | ||| || | ||||||| ||
Sbjct 690597 CCCAATTTCCATCCAGCAAAGTGCATAGATGTGATCTTGCCCATTG-TAGGATCCTTCAT 690655
Query 70920 GTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTAT 70979
|||||| ||||| || ||| ||||||||| || || || | || |||||||||| |
Sbjct 690656 GTGAATGTTCATTGATTGAGATTGATCGATAAATGCACCGCGATCAGCAGCCATTTGAAC 690715
Query 70980 GATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAG 71039
|| || ||| | ||||||||||| ||| || |||| ||| || || ||||||
Sbjct 690716 AATTGTTCGTTGAGAAATTTCCCAAACAGTCTTGTAAAGGGCCTTGATGTCAGCTGGAAT 690775
Query 71040 GTTTG---TATTCTGAATGGATCCACCATCTGCAATAATCCTATTTTTGATCTCTTCATT 71096
||| | | || ||||| ||||||||||| ||||| || | || || || | |||
Sbjct 690776 GTTGGGGATGTTTTGAATAGATCCACCATCAGCAATGATACGGTTCTTCATGTTGTCAGA 690835
Query 71097 CCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTTGAAATTCTCC 71156
||| | | || | || | ||||| || ||||| ||||| ||||||||
Sbjct 690836 CCAAAGACCCATATCAACAAGGTCTTTGAGGAGCCATGGGTTAACAACTTGGAATTCTCC 690895
Query 71157 AGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACTGACTCATTATTTCC 71216
| || || | ||| | ||| || || || || ||||| | | || || ||
Sbjct 690896 GGCCAGAACACGACGTGAGTAGATGTTTGAAGTGTATGGTTCAAAACATTCGTTGAAACC 690955
Query 71217 CAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCAC 71255
| ||||| | ||| ||||| ||||||||||| ||
Sbjct 690956 GAGGATTTGTGAAGTGCTAGCAGTAGGCATAGGTGCAAC 690994
>seq9
Length=1212739
Score = 140 bits (154), Expect = 4e-28
Identities = 295/438 (67%), Gaps = 4/438 (1%)
Strand=Plus/Minus
Query 41774 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTT 41833
|||||||| || || || | || ||||| || || ||||| || |||| || || ||
Sbjct 165760 TTTTGGTAATCTCCAACTCTCTTCTCGAAGAAGTTGGTCTTGCCAGCCAAGGAGATGTTC 165701
Query 41834 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 41893
|||||||| || || || |||| | || || | ||| | ||||| || | |
Sbjct 165700 TCCATGAAGTCGAATGGGTTGGCAGACTTGTAGACTTTGTCGTTACCCAAAGCAACCAGC 165641
Query 41894 AATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 41953
| | ||| |||| ||| || || ||| ||||| | | | ||||| |||| |||
Sbjct 165640 AGACGATCAGCGACGAACTCAATGTATTGCTTCATGAGAGTAGAGTTCATGCCTAAAAGA 165581
Query 41954 TTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATA 42013
||||||||| | || | ||||||||||| || || || || || || | |
Sbjct 165580 GAGCAAGGAAGAGCCTCGGTCAAGAATTCTTGTTCGATTTCAACGGCTTCGGTAATGACA 165521
Query 42014 GATCTT--ACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGA 42071
|||| || | || || || | | | | ||| || | | |||||||
Sbjct 165520 --TCTTGGACGGCTTGTTTGGATGGGCGGTGCTTGAGATGAGAGAATAGGAGGCATGCGA 165463
Query 42072 AATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCA 42131
||||| ||| ||||| ||||| | || | ||||||||| || |||||||| | ||
Sbjct 165462 AATCGGTGTGGAGACCTTCATCACGGGAGATGAGTTCGTTGGAGAAGGTGAGTCCAGCCA 165403
Query 42132 TTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTT 42191
| || ||||||||||| ||||| || || || ||||| |||||||| |||||||| ||||
Sbjct 165402 TGAGACCACGCTTTTTGAGCCAGAAGATTGATGCAAAAGATCCAGAGAAGAAGATACCTT 165343
Query 42192 CTACTGCCGCAAAGGCAA 42209
| || || || || ||||
Sbjct 165342 CAACAGCGGCGAATGCAA 165325
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 671133973503480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |