Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20glacialis_20[genbank_20GCA_5F002162575.1_202017-05-31] 623 sequences; 41,098,534 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq3 268 1e-66 seq9 147 3e-30 >seq3 Length=2126074 Score = 268 bits (296), Expect = 1e-66 Identities = 1316/2067 (64%), Gaps = 53/2067 (3%) Strand=Plus/Plus Query 61995 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 62054 ||||||||||| || || || || | | ||||||| |||||||||||| || || | | Sbjct 690537 GTGAATTGAATAGGTGCTGAGGCAGCCATAGTACGTAAATAGTACATTCCGGTCTTCAAA 690596 Query 62055 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 62114 || | ||||||| ||| |||||| || | ||| | ||||| || Sbjct 690597 CCCAATTTCCATCCAGCAAAGTGCATAGATGTGATCTTGCCCATTGTAGGATCCTTCATG 690656 Query 62115 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 62174 || || ||||| |||||| ||||||||| || || || | || |||||||||| | Sbjct 690657 TGAATGTTCATTGATTGAGATTGATCGATAAATGCACCGCGATCAGCAGCCATTTGAACA 690716 Query 62175 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 62234 || || ||| | ||||||||||| ||| || |||| ||| || || |||||| | Sbjct 690717 ATTGTTCGTTGAGAAATTTCCCAAACAGTCTTGTAAAGGGCCTTGATGTCAGCTGGAATG 690776 Query 62235 TTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTC 62291 || | | || ||||| ||||||||||| || || || | ||||| || | ||| | Sbjct 690777 TTGGGGATGTTTTGAATAGATCCACCATCAGCAATGATACGGTTCTTCATGTTGTCAGAC 690836 Query 62292 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCA 62351 || | | || | || | ||||| || ||||| ||||| |||||||| Sbjct 690837 CAAAGACCCATATCAACAAGGTCTTTGAGGAGCCATGGGTTAACAACTTGGAATTCTCCG 690896 Query 62352 GACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCC 62411 | || || | || | ||| || || || || ||||| | | || || || Sbjct 690897 GCCAGAACACGACGTGAGTAGATGTTTGAAGTGTATGGTTCAAAACATTCGTTGAAACCG 690956 Query 62412 AAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCG 62471 | ||||| | ||| ||||| ||||||||||| || | | | || | || ||| Sbjct 690957 AGGATTTGTGAAGTGCTAGCAGTAGGCATAGGTGCAACAAGAAGAGAGTTGCGAATTCCG 691016 Query 62472 TATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNN 62531 | | |||| | || | || ||||||| ||| | ||| || || || Sbjct 691017 TGTTGCTTGATGGATTGCTTCAAAGAGTCCCAATCCCACAAATCAGAAGGAGTGACGCCC 691076 Query 62532 NNNNNNNNNNNTTGTAGAATACCGTT----ACTGGCGTACGATCCTACATATGTATCGTA 62587 ||| || ||| || ||||| | | ||| || || ||||| Sbjct 691077 CACATGTCATATTGGAGTTCACCCTTGGAGACTGGAG----AGCCTTGGTAAGTTTCGTA 691132 Query 62588 TGGTCC---TTCCTTCTC-AGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGG 62643 || || |||||| | | || | ||| | || || ||| ||| || |||| Sbjct 691133 CGGGCCAAGTTCCTTTGCGATCTCG---ACAGATGAGGTC-AAGGCAGCGTGGTAGATGG 691188 Query 62644 TTTCGAAGATCTTCTTATTTAGAT-CTTGTGCTTCCAGGCTA-TCAAATGGATAATTTAA 62701 | || || |||| | || || | |||| ||||| ||| | || |||||| | || Sbjct 691189 TCTCAAAAATCTGGATGTTGAGGTGCTTG-GCTTCT-GGCGAGTCGAATGGAAGACG-AA 691245 Query 62702 GAG--AATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTA 62759 ||| || ||| || || || | ||||||||||||| | ||||||||| ||| | | Sbjct 691246 GAGCCAAGAAA-GCATCAGCAAGACCTTGAACACCAACAGCGATAGGTCGATGACGGAAA 691304 Query 62760 TTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTT 62819 || || |||||| | | |||||||| || ||||| || || || || | ||| Sbjct 691305 TTGCTCCTTCTGGCTTCTTGTACTGGATAATAGTTGATATCAATGATCTTGTTCAAGTTT 691364 Query 62820 CTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA---TCGCCCATCTATT 62876 || || | |||| ||| || || | || || | |||||| | || | ||| || Sbjct 691365 CTAACGACCACTTGGACAACCTCGTGAAGCTTTTGGAAATCATAAGTTCCCTCATTCATG 691424 Query 62877 ---AC-AAACATGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATC 62932 || ||| || | || ||| || |||| ||||| || ||||||| | | Sbjct 691425 TTGACGAAAGTTGGTAGAG-CAATTGAAGCCAAGTTACAGCAAGCAACCTCATCTGGTGC 691483 Query 62933 CGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTG 62992 | || | | ||||| ||||| | || | ||||| || | || | ||| Sbjct 691484 AGAGTACTCGACGATCTCTGTGCACAAGTTGGAGCTGCGAATAGTACCAAGGTTCTTTTG 691543 Query 62993 ATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTG 63052 || ||||| ||||| || ||||| || ||||| ||||| ||| | || ||||| | || Sbjct 691544 GTTGCTCTTCTTGTTGCATGCATCTTTGTAAAGCATGAAAGGATTTCCGGTTTCGGTTTG 691603 Query 63053 AGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCCTTTC 63112 || || | ||| | | ||||| | ||||||| || || ||| | | || | Sbjct 691604 AGCCTCAAGAATAGAGTACCAGAGCTTTTGAGCCTTGAT---AGTCTTGCGACCCTTTCC 691660 Query 63113 TC---TTTCGTATAGTGTA-TACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATC 63168 | |||| || | | | || | || ||||| || || |||||| |||| | Sbjct 691661 TGCCTTTTCATA-ACTCTCGTAGAGGGCCTCAAACTCCTCGCCATAAACATCTGCCAAAC 691719 Query 63169 CAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAA 63228 |||| ||||||| || ||||| | | ||| ||||| | | | || || ||||| | Sbjct 691720 CAGGGCATTCATTGGGGCACATAAGAGTCCATTCTCCATTCTTTTCGACACGCTTCATGA 691779 Query 63229 AGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCT 63287 | | |||||||||||| | || ||| || ||||| | | | | ||| || || || Sbjct 691780 ACAAATCAGGAATCCACA-AGGCATAGAAGAGATCGCGTGCGCGAACTTCTTCCTTACCG 691838 Query 63288 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 63347 ||||| ||||| || ||| | | || ||| | |||||| || || | ||| | Sbjct 691839 TGGTTCTTGCGTAGATCAAGAAACTCGAAAACATCGGCATGCCATGGCTCAAGGTAAACA 691898 Query 63348 GCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 63407 || | | | || || |||||||| || |||||||| | ||||| || ||||| || || Sbjct 691899 GCAAAAGCACCCGGGCGTTTGTTACCACCCTGATCAACATATCTTGCAGTGTTGTTGAAA 691958 Query 63408 ACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCA 63467 |||| | ||| |||| |||||| || || | ||||| ||||||| ||| || ||| Sbjct 691959 ACTCGAAGCATGGGAACAATACCATTGGAATTTCCATTAGTACCGGCGATGTATGCACCA 692018 Query 63468 CTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCG 63527 | ||||| || | ||| ||||| || || || || | || ||||| | || Sbjct 692019 GTAGCACGGATTCTGTGAATGTTGAGACCAATACCACCGGCATTCTTTGAGATCATGGCA 692078 Query 63528 CATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAA 63587 || || || || || |||||||| || || ||||| || |||||| | || || Sbjct 692079 CAAATCTTCAAAGTATCGTAGATACCATCAATACTATCCTCTTTCATGTCGATGAGGAAG 692138 Query 63588 CAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTA 63647 || || | ||| | ||| |||||| ||| | || || ||||| || ||| Sbjct 692139 CACGACGAAAGTTGTGCTTGTGGAGTACCCGCAGAAAAGAGCGTTGGGGAAGCATGTGTA 692198 Query 63648 AACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC-CCATTGATG 63706 || | || | || | | ||||| || || ||||| || ||||| || | || Sbjct 692199 AAGTACTTGTTTGACATCAAGTTGTATGTTTCGATAGCACTTTCGATATCATCACCG-TG 692257 Query 63707 AATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTAT 63766 ||| || || || |||||||| | ||| || ||||| | || | | || | | Sbjct 692258 AATACCCACGGCAACACGCATGATCATTTGTTGAGGACGCTCCGCAACTTTACCATCAAG 692317 Query 63767 TTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCT 63824 || | || ||| || | || || || || || || | ||| ||||| || Sbjct 692318 ACGTAAAAGATATGATCGCTCAAGGGTCTTGAACCCGAAGTATTGGTAGTTGAAA--TCC 692375 Query 63825 CGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTATATCCATGGTG 63884 || || || | |||| | |||||||||| |||| || | | | || || | || Sbjct 692376 CGGTCATAGACAATAGCAGAGTTGAGTTCTTCCTCATGTCTCATGACGCATTCGAAAGT- 692434 Query 63885 ATACTTG-AAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATC 63943 | |||| ||| || |||||| ||| |||||||| || || ||| | | ||||||| Sbjct 692435 TTCCTTGCTAATCATAGGAGAAGCTTTGCCATTTTTTGGGTTTGTATATTGGTATAAATC 692494 Query 63944 CTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCT 64003 || || | || | || || |||| ||||| || |||||||| || || | Sbjct 692495 GCGGATAACGTGGGAGAACTGCTTCTTGGTTTGTTTGTGGAGGTTTGATACTGCAATACG 692554 Query 64004 GGCGGCTAGAATGGCATAATCCGGATG 64030 || ||||||||||||||||| ||||| Sbjct 692555 AGCAGCTAGAATGGCATAATCGGGATG 692581 >seq9 Length=1212739 Score = 147 bits (162), Expect = 3e-30 Identities = 340/512 (66%), Gaps = 3/512 (1%) Strand=Plus/Minus Query 33013 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 33072 |||||||| || || || | || ||||| || || || || || |||| || || || Sbjct 165760 TTTTGGTAATCTCCAACTCTCTTCTCGAAGAAGTTGGTCTTGCCAGCCAAGGAGATGTTC 165701 Query 33073 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 33132 |||||||| || || || |||| | || || | ||| | ||||| || | | Sbjct 165700 TCCATGAAGTCGAATGGGTTGGCAGACTTGTAGACTTTGTCGTTACCCAAAGCAACCAGC 165641 Query 33133 AATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 33192 | | ||| |||||||| || || ||| ||||| | | | ||||| |||| ||| Sbjct 165640 AGACGATCAGCGACGAACTCAATGTATTGCTTCATGAGAGTAGAGTTCATGCCTAAAAGA 165581 Query 33193 TTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATA 33252 ||||||||| | || | ||||||||||| || || || || || || | | Sbjct 165580 GAGCAAGGAAGAGCCTCGGTCAAGAATTCTTGTTCGATTTCAACGGCTTCGGTAATGACA 165521 Query 33253 GATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGCGAAA 33312 | |||| || || || | ||| | ||| || | | ||||||||| Sbjct 165520 TCTTGGACGGCTTGTTTGGATGGGCGGTGCTTGAGATGAGAGAATAGGAGGCATGCGAAA 165461 Query 33313 TCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATT 33372 ||| ||| ||||| || || | || ||||||||||| || |||||||| | ||| Sbjct 165460 TCGGTGTGGAGACCTTCATCACGGGAGATGAGTTCGTTGGAGAAGGTGAGTCCAGCCATG 165401 Query 33373 AGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCT 33432 || ||||||||||| ||||| || || || || || |||||||| |||||||| ||||| Sbjct 165400 AGACCACGCTTTTTGAGCCAGAAGATTGATGCAAAAGATCCAGAGAAGAAGATACCTTCA 165341 Query 33433 ACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGT---ATCCACTTT 33489 || || || || |||| || | | || | | ||| | || | ||||| || Sbjct 165340 ACAGCGGCGAATGCAACGAGACGTTGAGCAAAGGTAGAGCTCTTATCTTCAATCCATTTG 165281 Query 33490 TGAGCCCAATCGGCCTTCTTTTTTACACAAGG 33521 ||||||||||||||| || || | ||||| Sbjct 165280 ACAGCCCAATCGGCCTTTTTCTTAATGCAAGG 165249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622942348798680