Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20glacialis_20[genbank_20GCA_5F002162575.1_202017-05-31] 623 sequences; 41,098,534 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq18 109 5e-19 seq3 107 2e-18 >seq18 Length=877782 Score = 109 bits (120), Expect = 5e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 26793 ACTGGAAAATCGATCACCATCGAATTAGAATCAAACGACACCATCGAGCAAGTCAAACAA 26852 || ||||| | |||||| |||| | ||||| || || ||||| | |||||| Sbjct 575780 ACCGGAAAGACCATCACCCTCGAGGTTGAATCTTCTGATACTATCGATAACGTCAAAGCC 575721 Query 26853 AAGATTACCGACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAA 26912 |||||| |||||||| || || || ||||| |||||| | | |||| || ||| || Sbjct 575720 AAGATTCAAGACAAAGAGGGCATCCCACCCGACCAACAACGTTTGATTTTCGCCGGAAAG 575661 Query 26913 CAACTCGAAGATGATAGAAACGTCAGCGACTATAACATTCAAAAAGAATCTACTATCCAT 26972 ||||| || |||| | | | | || ||||||||||| || || || |||||| ||||| Sbjct 575660 CAACTTGAGGATGGTCGTACCCTCTCAGACTATAACATCCAGAAGGAGTCTACTCTCCAT 575601 Query 26973 CTGGTCCTGAGACTTAGAGGAGG 26995 |||| || |||||| | || || Sbjct 575600 TTGGTTCTCAGACTTCGTGGTGG 575578 Score = 100 bits (110), Expect = 3e-16 Identities = 135/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 26793 ACTGGAAAATCGATCACCATCGAATTAGAATCAAACGACACCATCGAGCAAGTCAAACAA 26852 |||||||| | |||||| | || | || || | |||||| || || | |||||| Sbjct 576064 ACTGGAAAGACCATCACCCTTGAGGTCGAGTCCAGCGACACTATTGACAATGTCAAAGCC 576005 Query 26853 AAGATTACCGACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAA 26912 ||||| ||||| || ||||| |||||||||||||| | | |||| || ||||| Sbjct 576004 AAGATCCAAGACAAGGAGGGGATTCCTCCCGATCAACAGCGTTTGATTTTCGCAGGCAAG 575945 Query 26913 CAACTCGAAGATGATAGAAACGTCAGCGACTATAACATTCAAAAAGAATCTACTATCCAT 26972 ||||| ||||||| | | | | || ||||| |||||||| || || || || | ||| Sbjct 575944 CAACTTGAAGATGGTCGCACCCTCTCAGACTACAACATTCAGAAGGAGTCCACACTTCAT 575885 Query 26973 CTGGTCCT 26980 || ||||| Sbjct 575884 CTCGTCCT 575877 >seq3 Length=2126074 Score = 107 bits (118), Expect = 2e-18 Identities = 419/645 (65%), Gaps = 29/645 (4%) Strand=Plus/Plus Query 148251 TCGTAATTTTCGTAAAGGTCCTCGAATTCTTGGCCATAGCAATCGTTTAAACCGGGACAC 148310 || ||| | ||||| ||| |||| || || | |||||| ||| ||||| || || Sbjct 691668 TCATAACTCTCGTAGAGGGCCTCAAACTCCTCGCCATAAACATCTGCCAAACCAGGGCAT 691727 Query 148311 TCGTCGGGGCACATCAATGACCATTTCCCTCCTGTCTTT---ACCCTCTTCATAAACAGA 148367 || | ||||||||| | | ||||| |||| ||||| || | |||||| |||| | Sbjct 691728 TCATTGGGGCACATAAGAGTCCATT---CTCCATTCTTTTCGACACGCTTCATGAACAAA 691784 Query 148368 TCAGGTGTCCACATGGCAAAAAGAAGATCGCGAGCCTTCATATCCTCGGCACCCA---TA 148424 ||||| |||||| |||| | | |||||||| || | || || ||| | Sbjct 691785 TCAGGAATCCACAAGGCATAGAAGAGATCGCGTGCGCGAACTTCTTCCTTACCGTGGTTC 691844 Query 148425 TTGCGCTTTAGATCCaaaaaagtaaaaaCGTCTGCGTGCCAAGGCTCGATGTATACGGTC 148484 ||||| |||||| | ||| ||||| || || ||||| ||||| | ||| || | Sbjct 691845 TTGCG---TAGATCAAGAAACTCGAAAACATCGGCATGCCATGGCTCAAGGTAAACAGCA 691901 Query 148485 ATGGCGCCTTTCCTTTT---ACCTCCTTGATCGACATGGCGTAGCA-TGCTATTAAAAAC 148540 | || || | ||| ||| || ||||| |||| | | ||| || | || ||||| Sbjct 691902 AAAGCACCCGGGCGTTTGTTACCACCCTGATCAACATATCTT-GCAGTGTTGTTGAAAAC 691960 Query 148541 ACGCAATGCA-GGTCCCAATCCCGCCGCAGTT-CCGTTTGTGGATTCAATTTTACTATTG 148598 || | ||| || |||| || | | || || || || | || | | Sbjct 691961 TCGAA--GCATGGGAACAATACCATTGGAATTTCCATTAGTACCGGCGATGTATGCACCA 692018 Query 148599 GTGGCGCGAATT---TGAGTGACATTCAGGCCGATGCCGCCTCCGTGTTTAGATATCATG 148655 || || || ||| ||| || || || || || || || | | || || |||||| Sbjct 692019 GTAGCACGGATTCTGTGAATG---TTGAGACCAATACCACCGGCATTCTTTGAGATCATG 692075 Query 148656 GCACAATCGTTGAGTGTTTTATAGATGCCGTTAATACTGTCCTCTTGAATGTTAAGCAGG 148715 |||||| || | || | ||||| || | |||||| ||||||| |||| | ||| Sbjct 692076 GCACAAATCTTCAAAGTATCGTAGATACCATCAATACTATCCTCTTTCATGTCGATGAGG 692135 Query 148716 TAGCACGATGACATTTGAGGCATTTTCA-TGCCAGACGAAAATAGAGTTGGACTAGCGTG 148774 ||||||| || | ||| || | | | | || | ||||| || ||||| ||| || Sbjct 692136 AAGCACGACGAAAGTTG-TGCTTGTGGAGTACCCGCAGAAAAGAGCGTTGGGGAAGCATG 692194 Query 148775 AGTGAACAGCTTTGCCCGCATCAATCTATAGGATTCGATAGCGCTTTCGATGTCATCACC 148834 || || ||| |||||| | || | ||||||||| |||||||| |||||||| Sbjct 692195 TGTAAAGTACTTGTTTGACATCAAGTTGTATGTTTCGATAGCACTTTCGATATCATCACC 692254 Query 148835 ATGAATCTGTAGAGCTACACGCATCAGCATGTGTTGAGGCCTCTC 148879 ||||| | || |||||||| | ||| |||||||| | ||| Sbjct 692255 GTGAATACCCACGGCAACACGCATGATCATTTGTTGAGGACGCTC 692299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478658672416560