Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20glacialis_20[genbank_20GCA_5F002162575.1_202017-05-31]
623 sequences; 41,098,534 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq18 120 3e-22
seq34 107 2e-18
>seq18
Length=877782
Score = 120 bits (132), Expect = 3e-22
Identities = 156/213 (73%), Gaps = 2/213 (1%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || |||||| | ||||| || | ||||| | || || ||||||||
Sbjct 575576 ATGCAGATCTTCGTCAAGACTCTCACCGGAAAGACAATCACTTTAGAGGTTGAGTCGTCG 575517
Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
|| || ||||| ||||| | || | ||| |||||||| || || |||||||||||
Sbjct 575516 GATACCATCGACAATGTGAAGGCTAAGATTCAA-GACAAAGAGGGTATCCCACCTGACCA 575458
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
||| || |||| ||||| || || ||| | || |||| || ||| | ||| |||||
Sbjct 575457 ACAACGTCTTATCTTTGCTGGTAAGCAACTTGAGGATGGCCGAACTCTTTCCGACTACAA 575398
Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|| ||||||||||| || ||||||| || ||
Sbjct 575397 CATCCAAAAAGAATCAACTTTACATTTGGTCCT 575365
Score = 91.5 bits (100), Expect = 1e-13
Identities = 151/216 (70%), Gaps = 8/216 (4%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||| ||||| ||||| ||||| || || | |||||| | || || || || ||
Sbjct 575348 ATGCAAATCTTTGTTAAGACCTTGACTGGAAAGACTATCACATTAGAGGTAGAATCTTCG 575289
Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114
|| ||||| || |||| | || || | ||| || || || || |||||||||||
Sbjct 575288 GATACTATTGATAATGTCA---AGGCTAAGATTCAG-GATAAGGAGGGCATTCCACCTGA 575233
Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174
|||||||| | || || || || || || || || || | | ||| | |||||
Sbjct 575232 TCAACAGCGATTGATCTTCGCTGGAAAGCAGTTGGAGGACGGCAGAACTCTTTTGGATTA 575173
Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
||| |||||||| ||| ||| | || || |||||
Sbjct 575172 CAACATTCAAAAGGAAAGCACCTTGCACTTGGTGCT 575137
>seq34
Length=376069
Score = 107 bits (118), Expect = 2e-18
Identities = 154/215 (72%), Gaps = 4/215 (2%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || ||||| | || || ||| | ||||| |||| || ||||| ||
Sbjct 166531 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAAACTATCACCCTCGAGGTTGAGTCTTCG 166472
Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116
||||| ||||| || || ||| || ||| ||||| || || |||||||| ||||
Sbjct 166471 GACACCATCGA--CAATGTCAAGGCCAAGATCCAAGACAAGGAGGGAATTCCACCCGACC 166414
Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176
||||||| | || || ||||| || ||| | || |||| ||||| | ||| ||||
Sbjct 166413 AACAGCGATTGATCTTCGCCGGAAAGCAACTCGAGGATGGCCGCACCCTTTCCGACTACA 166354
Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTA 25211
| || ||||| || ||||| || || || ||| ||
Sbjct 166353 ACATCCAAAAGGAGTCCACTCTTCACTTGGTGTTA 166319
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433324709821745
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |