Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20glacialis_20[genbank_20GCA_5F002162575.1_202017-05-31] 623 sequences; 41,098,534 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq18 138 1e-27 seq34 118 9e-22 seq5 84.2 2e-11 >seq18 Length=877782 Score = 138 bits (152), Expect = 1e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || ||| | ||||| || || ||||| | || || || | | Sbjct 575576 ATGCAGATCTTCGTCAAGACTCTCACCGGAAAGACAATCACTTTAGAGGTTGAGTCGTCG 575517 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | ||| || | || || ||||||||||| |||||||| ||||| || ||| Sbjct 575516 GATACCATCGACAATGTGAAGGCTAAGATTCAAGACAAAGAGGGTATCCCACCTGACCAA 575457 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||||||||| ||||| || || || | |||||| ||| || | ||||| |||||| Sbjct 575456 CAACGTCTTATCTTTGCTGGTAAGCAACTTGAGGATGGCCGAACTCTTTCCGACTACAAC 575397 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGT 22427 || ||||||||||| || ||||||| || Sbjct 575396 ATCCAAAAAGAATCAACTTTACATTTGGT 575368 Score = 114 bits (126), Expect = 1e-20 Identities = 129/173 (75%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 || || || || |||| ||||| || || ||| ||| || | ||| || ||||| Sbjct 576064 ACTGGAAAGACCATCACCCTTGAGGTCGAGTCCAGCGACACTATTGACAATGTCAAAGCC 576005 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || |||||||||||||| ||||| ||||||||||| ||| | || || || ||||| Sbjct 576004 AAGATCCAAGACAAGGAGGGGATTCCTCCCGATCAACAGCGTTTGATTTTCGCAGGCAAG 575945 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCAC 22415 || | || ||| |||||| |||| || ||||||||||| || || ||||| Sbjct 575944 CAACTTGAAGATGGTCGCACCCTCTCAGACTACAACATTCAGAAGGAGTCCAC 575892 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| |||||||| || || || || || || |||| | || || ||| | | Sbjct 575348 ATGCAAATCTTTGTTAAGACCTTGACTGGAAAGACTATCACATTAGAGGTAGAATCTTCG 575289 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || |||| || ||||| || |||||||| |||||||| |||||| Sbjct 575288 GATACTATTGATAATGTCAAGGCTAAGATTCAGGATAAGGAGGGCATTCCACCTGATCAA 575229 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || | || || || || || ||||| ||||| | | || | | ||||||||| Sbjct 575228 CAGCGATTGATCTTCGCTGGAAAGCAGTTGGAGGACGGCAGAACTCTTTTGGATTACAAC 575169 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGT 22427 |||||||| ||| |||| | || || || Sbjct 575168 ATTCAAAAGGAAAGCACCTTGCACTTGGT 575140 Score = 102 bits (112), Expect = 7e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 22231 GTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGAC 22290 ||||| || | ||||| || || |||| || || || ||| | | ||||| | || Sbjct 575792 GTTAAGACCCTCACCGGAAAGACCATCACCCTCGAGGTTGAATCTTCTGATACTATCGAT 575733 Query 22291 GATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATA 22350 | ||||| || ||||||||||| ||||| || |||||||| ||||||||| | || Sbjct 575732 AACGTCAAAGCCAAGATTCAAGACAAAGAGGGCATCCCACCCGACCAACAACGTTTGATT 575673 Query 22351 TTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAA 22410 || ||||| || || | |||||| || ||| |||| || || ||||| || || || Sbjct 575672 TTCGCCGGAAAGCAACTTGAGGATGGTCGTACCCTCTCAGACTATAACATCCAGAAGGAG 575613 Query 22411 TCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || | ||||| ||| | || | || || ||| Sbjct 575612 TCTACTCTCCATTTGGTTCTCAGACTTCGTGGTGGT 575577 >seq34 Length=376069 Score = 118 bits (130), Expect = 9e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || || ||||| |||| || || || || | | Sbjct 166531 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAAACTATCACCCTCGAGGTTGAGTCTTCG 166472 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| || |||| || || |||||||||||||| ||||||||||| ||| Sbjct 166471 GACACCATCGACAATGTCAAGGCCAAGATCCAAGACAAGGAGGGAATTCCACCCGACCAA 166412 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || | || || ||||| || || | |||||| ||||||| | ||||| |||||| Sbjct 166411 CAGCGATTGATCTTCGCCGGAAAGCAACTCGAGGATGGCCGCACCCTTTCCGACTACAAC 166352 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || ||||| || ||||| | || || || || || | || || ||| Sbjct 166351 ATCCAAAAGGAGTCCACTCTTCACTTGGTGTTACGTCTCCGTGGTGGT 166304 >seq5 Length=1928780 Score = 84.2 bits (92), Expect = 2e-11 Identities = 117/164 (71%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 || || || || |||| ||||| || || || | || || | ||| || | || Sbjct 1275288 ACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCTGACACTATCGACAATGTTAAGGCT 1275229 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || |||||||||||||| ||||| ||||||||||||||| | || || || || || Sbjct 1275228 AAGATCCAAGACAAGGAGGGAATTCCCCCCGATCAACAACGTTTGATCTTCGCTGGAAAG 1275169 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAA 22406 || | ||||| || || | || ||||||||||| ||||| Sbjct 1275168 CAACTTGAGGACGGACGTACTCTTTCAGATTACAACATCCAAAA 1275125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419724813083995