Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20glacialis_20[genbank_20GCA_5F002162575.1_202017-05-31]
623 sequences; 41,098,534 total letters
Query= NC_010240.1
Length=169794
Score E
Sequences producing significant alignments: (Bits) Value
seq18 118 1e-21
seq34 105 7e-18
>seq18
Length=877782
Score = 118 bits (130), Expect = 1e-21
Identities = 170/237 (72%), Gaps = 2/237 (1%)
Strand=Plus/Plus
Query 41973 ATTTATCGACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTG 42032
|||||| |||| || | | ||| | |||||| ||||| ||||| ||||||||||| |||
Sbjct 575113 ATTTATTGACCACCACGAAGACGGAGCACCAAGTGCAAGGTGCTTTCCTTTTGAATGTTG 575172
Query 42033 TAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGG 42092
||||| ||||| | |||| || | |||||| |||||||| || | |||||| ||
Sbjct 575173 TAATCCAAAAGAGTTCTGCCGTCCTCCAACTGCTTTCCAGCGAAGATCAATCGCTGTTGA 575232
Query 42093 TCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCT 42151
|| | ||| | || |||||| ||| ||| | || | |||| | | | || ||
Sbjct 575233 TCAGGTGGAATGCCCTCCTTATCC-TGAATCTTAGCCTTGACATTATCAATAGTATCCGA 575291
Query 42152 CGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
||||| || || | ||||| || || || || | ||||| ||||||||||||||
Sbjct 575292 AGATTCTACCTCTAATGTGATAGTCTTTCCAGTCAAGGTCTTAACAAAGATTTGCAT 575348
>seq34
Length=376069
Score = 105 bits (116), Expect = 7e-18
Identities = 153/216 (71%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052
||| |||||||| || | ||| ||||||||| || ||||| || | || || || |
Sbjct 166316 ACGTAACACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAAAGGGTGCGGCC 166375
Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112
|| || || ||||| || ||||| || | |||||| ||||||| ||| | | ||||||
Sbjct 166376 ATCCTCGAGTTGCTTTCCGGCGAAGATCAATCGCTGTTGGTCGGGTGGAATTCCCTCCTT 166435
Query 42113 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 42172
||| ||| || |||| | | | ||||| || || || |||| |||||
Sbjct 166436 GTCTTGGATCTTGGCCTTGACATTGTCGATGGTGTCCGAAGACTCAACCTCGAGGGTGAT 166495
Query 42173 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
||||||||||| || ||||| || ||||| |||||
Sbjct 166496 AGTTTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 166531
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 543208569730320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |