Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20glacialis_20[genbank_20GCA_5F002162575.1_202017-05-31]
623 sequences; 41,098,534 total letters
Query= NC_010276.1
Length=156179
Score E
Sequences producing significant alignments: (Bits) Value
seq18 104 2e-17
seq3 84.2 2e-11
>seq18
Length=877782
Score = 104 bits (114), Expect = 2e-17
Identities = 139/191 (73%), Gaps = 2/191 (1%)
Strand=Plus/Plus
Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291
|| || ||||||| || || || || ||||||||||| |||| || |||||| | |||
Sbjct 575877 AGGACGAGATGAAGTGTGGACTCCTTCTGAATGTTGTAGTCTGAGAGGGTGCGACCATCT 575936
Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351
||||| |||||||| || |||| | ||||| || ||||||||||| || || || |||
Sbjct 575937 TCAAGTTGCTTGCCTGCGAAAATCAAACGCTGTTGATCGGGAGGAATCCCCTCCTTGTCT 575996
Query 64352 TGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410
|| | | || ||||| ||| || | || || | || || || || | || | |||
Sbjct 575997 TGGA-TCTTGGCTTTGACATTGTCAATAGTGTCGCTGGACTCGACCTCAAGGGTGATGGT 576055
Query 64411 CTTGCCGGTCA 64421
||| || ||||
Sbjct 576056 CTTTCCAGTCA 576066
Score = 95.1 bits (104), Expect = 1e-14
Identities = 151/215 (70%), Gaps = 4/215 (2%)
Strand=Plus/Plus
Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290
||| || | ||| | || ||||||||||| |||||||| || | | || || | ||
Sbjct 575364 AAGGACCAAATGTAAAGTTGATTCTTTTTGGATGTTGTAGTCGGAAAGAGTTCGGCCATC 575423
Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350
||||| ||||| || ||| | || || || || ||||| || || || || ||||| ||
Sbjct 575424 CTCAAGTTGCTTACCAGCAAAGATAAGACGTTGTTGGTCAGGTGGGATACCCTCTTTGTC 575483
Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCG--TCCACTTCTACAGTTACG 64408
||| || || ||| ||| || | |||| ||| || || || |||| ||| |
Sbjct 575484 TTGAATCTTAGCCTTCACATTGTCGATGGTAT--CCGACGACTCAACCTCTAAAGTGATT 575541
Query 64409 GTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
||||| ||||| | ||| || ||||| || |||||
Sbjct 575542 GTCTTTCCGGTGAGAGTCTTGACGAAGATCTGCAT 575576
>seq3
Length=2126074
Score = 84.2 bits (92), Expect = 2e-11
Identities = 152/220 (69%), Gaps = 2/220 (1%)
Strand=Plus/Plus
Query 155222 CAAAGTTTCGTACATTCCTTTGATGCTGTCTTCTTTCAACGTCAACAAGAAA-CACGAAG 155280
|||||| ||||| || || | || || || ||||||| ||| | || || ||||| |
Sbjct 692087 CAAAGTATCGTAGATACCATCAATACTATCCTCTTTCAT-GTCGATGAGGAAGCACGACG 692145
Query 155281 ATAATTGAGGTTGAGGGCAGCCGGCCGCAAATAATGTAGGACTAGCGTGTGTAAACATTT 155340
| | ||| | ||| || || || | ||| | || || ||| |||||||| |
Sbjct 692146 AAAGTTGTGCTTGTGGAGTACCCGCAGAAAAGAGCGTTGGGGAAGCATGTGTAAAGTACT 692205
Query 155341 TGTTGGCGGTTAAGTTGTAAGTTTCGATGGCGGCGTCAATGTCACGACCGTGTATACCGA 155400
|||| | | |||||||| |||||||| || || || ||| |||||| ||||| |
Sbjct 692206 TGTTTGACATCAAGTTGTATGTTTCGATAGCACTTTCGATATCATCACCGTGAATACCCA 692265
Query 155401 TCGCCACGCGCATCAGCATGTGTTGAATGCGCTCCGCAAC 155440
|| || ||||| | ||| |||||| |||||||||||
Sbjct 692266 CGGCAACACGCATGATCATTTGTTGAGGACGCTCCGCAAC 692305
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 499640909016120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |