Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20glacialis_20[genbank_20GCA_5F002162575.1_202017-05-31] 623 sequences; 41,098,534 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq18 104 2e-17 seq3 84.2 2e-11 >seq18 Length=877782 Score = 104 bits (114), Expect = 2e-17 Identities = 139/191 (73%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||||| || || || || ||||||||||| |||| || |||||| | ||| Sbjct 575877 AGGACGAGATGAAGTGTGGACTCCTTCTGAATGTTGTAGTCTGAGAGGGTGCGACCATCT 575936 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 ||||| |||||||| || |||| | ||||| || ||||||||||| || || || ||| Sbjct 575937 TCAAGTTGCTTGCCTGCGAAAATCAAACGCTGTTGATCGGGAGGAATCCCCTCCTTGTCT 575996 Query 64352 TGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || | | || ||||| ||| || | || || | || || || || | || | ||| Sbjct 575997 TGGA-TCTTGGCTTTGACATTGTCAATAGTGTCGCTGGACTCGACCTCAAGGGTGATGGT 576055 Query 64411 CTTGCCGGTCA 64421 ||| || |||| Sbjct 576056 CTTTCCAGTCA 576066 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/215 (70%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || | ||| | || ||||||||||| |||||||| || | | || || | || Sbjct 575364 AAGGACCAAATGTAAAGTTGATTCTTTTTGGATGTTGTAGTCGGAAAGAGTTCGGCCATC 575423 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||||| ||||| || ||| | || || || || ||||| || || || || ||||| || Sbjct 575424 CTCAAGTTGCTTACCAGCAAAGATAAGACGTTGTTGGTCAGGTGGGATACCCTCTTTGTC 575483 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCG--TCCACTTCTACAGTTACG 64408 ||| || || ||| ||| || | |||| ||| || || || |||| ||| | Sbjct 575484 TTGAATCTTAGCCTTCACATTGTCGATGGTAT--CCGACGACTCAACCTCTAAAGTGATT 575541 Query 64409 GTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| ||||| | ||| || ||||| || ||||| Sbjct 575542 GTCTTTCCGGTGAGAGTCTTGACGAAGATCTGCAT 575576 >seq3 Length=2126074 Score = 84.2 bits (92), Expect = 2e-11 Identities = 152/220 (69%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 155222 CAAAGTTTCGTACATTCCTTTGATGCTGTCTTCTTTCAACGTCAACAAGAAA-CACGAAG 155280 |||||| ||||| || || | || || || ||||||| ||| | || || ||||| | Sbjct 692087 CAAAGTATCGTAGATACCATCAATACTATCCTCTTTCAT-GTCGATGAGGAAGCACGACG 692145 Query 155281 ATAATTGAGGTTGAGGGCAGCCGGCCGCAAATAATGTAGGACTAGCGTGTGTAAACATTT 155340 | | ||| | ||| || || || | ||| | || || ||| |||||||| | Sbjct 692146 AAAGTTGTGCTTGTGGAGTACCCGCAGAAAAGAGCGTTGGGGAAGCATGTGTAAAGTACT 692205 Query 155341 TGTTGGCGGTTAAGTTGTAAGTTTCGATGGCGGCGTCAATGTCACGACCGTGTATACCGA 155400 |||| | | |||||||| |||||||| || || || ||| |||||| ||||| | Sbjct 692206 TGTTTGACATCAAGTTGTATGTTTCGATAGCACTTTCGATATCATCACCGTGAATACCCA 692265 Query 155401 TCGCCACGCGCATCAGCATGTGTTGAATGCGCTCCGCAAC 155440 || || ||||| | ||| |||||| ||||||||||| Sbjct 692266 CGGCAACACGCATGATCATTTGTTGAGGACGCTCCGCAAC 692305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499640909016120