Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20glacialis_20[genbank_20GCA_5F002162575.1_202017-05-31]
623 sequences; 41,098,534 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq18 111 2e-19
seq34 100 3e-16
seq3 86.0 6e-12
>seq18
Length=877782
Score = 111 bits (122), Expect = 2e-19
Identities = 164/229 (72%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| || || | ||| | || ||||||| |||| || ||||| ||||||||||||
Sbjct 575350 CCACCACGAAGACGAAGGACCAAATGTAAAGTTGATTCTTTTTGGATGTTGTAGTCGGAA 575409
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| ||| || ||||| ||||| ||||| | | |||| ||||| |||||||| || ||
Sbjct 575410 AGAGTTCGGCCATCCTCAAGTTGCTTACCAGCAAAGATAAGACGTTGTTGGTCAGGTGGG 575469
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG--TTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565
||||| |||||||| ||| | || | || |||| || | ||| || | |||||| |
Sbjct 575470 ATACCCTCTTTGTC-TTGAATCTTAGCCTTCACATTG-TCGATGGTATCCGACGACTCAA 575527
Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
|||| | || | || || || || ||||| || || || ||||||||
Sbjct 575528 CCTCTAAAGTGATTGTCTTTCCGGTGAGAGTCTTGACGAAGATCTGCAT 575576
>seq34
Length=376069
Score = 100 bits (110), Expect = 3e-16
Identities = 163/232 (70%), Gaps = 2/232 (1%)
Strand=Plus/Plus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| || || | ||| || || || || | | ||||||||||| ||||||||||||
Sbjct 166305 CCACCACGGAGACGTAACACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAA 166364
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| || || ||||||||||| || |||| |||| | ||||||||||| || ||
Sbjct 166365 AGGGTGCGGCCATCCTCGAGTTGCTTTCCGGCGAAGATCAATCGCTGTTGGTCGGGTGGA 166424
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566
|| || || ||||| ||| || || | |||| || | |||||| | ||||| ||
Sbjct 166425 ATTCCCTCCTTGTCTTGGATCTTGGCCTTGACATTG-TCGATGGTGTCCGAAGACTCAAC 166483
Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGGCT 138618
||||| || | ||||| || || || || || || || ||||||||| ||
Sbjct 166484 CTCGAGGGTGATAGTTTTGCCCGTGAGGGTCTTGACGAAGATCTGCATGACT 166535
>seq3
Length=2126074
Score = 86.0 bits (94), Expect = 6e-12
Identities = 153/221 (69%), Gaps = 2/221 (1%)
Strand=Plus/Plus
Query 154314 GTTCCCGCCGAAAAGAGGGTGGGACTCGCGTGCGTAAAC-AGTTTTTGGCTCATCATGCG 154372
|| ||||| |||||||| || || || || ||||| | || || | ||||| |
Sbjct 692163 GTACCCGCAGAAAAGAGCGTTGGGGAAGCATGTGTAAAGTACTTGTTTGA-CATCAAGTT 692221
Query 154373 GTACGTTTCGATGGCGTCTTCGATATCATCGCCGTGAATGCCGAGCGCGACGCGCATGAG 154432
||| |||||||| || |||||||||||| |||||||| || | || || |||||||
Sbjct 692222 GTATGTTTCGATAGCACTTTCGATATCATCACCGTGAATACCCACGGCAACACGCATGAT 692281
Query 154433 CATGTGCTGCGGACGTTCGGCGACTCTATTGTCAATCTTCAAGAGATATCCATTTTCGAG 154492
||| || || ||||| || || ||| || |||| || |||||| || ||
Sbjct 692282 CATTTGTTGAGGACGCTCCGCAACTTTACCATCAAGACGTAAAAGATATGATCGCTCAAG 692341
Query 154493 GGTTTTGTAACCGAAATACTTGTATTCAAAATCTAGCTCAT 154533
||| ||| | ||||| || | ||| | ||||| | ||||
Sbjct 692342 GGTCTTGAACCCGAAGTATTGGTAGTTGAAATCCCGGTCAT 692382
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496258535356560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |