Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20glacialis_20[genbank_20GCA_5F002162575.1_202017-05-31] 623 sequences; 41,098,534 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq18 111 2e-19 seq34 100 3e-16 seq3 86.0 6e-12 >seq18 Length=877782 Score = 111 bits (122), Expect = 2e-19 Identities = 164/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | || ||||||| |||| || ||||| |||||||||||| Sbjct 575350 CCACCACGAAGACGAAGGACCAAATGTAAAGTTGATTCTTTTTGGATGTTGTAGTCGGAA 575409 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || ||||| ||||| ||||| | | |||| ||||| |||||||| || || Sbjct 575410 AGAGTTCGGCCATCCTCAAGTTGCTTACCAGCAAAGATAAGACGTTGTTGGTCAGGTGGG 575469 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG--TTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565 ||||| |||||||| ||| | || | || |||| || | ||| || | |||||| | Sbjct 575470 ATACCCTCTTTGTC-TTGAATCTTAGCCTTCACATTG-TCGATGGTATCCGACGACTCAA 575527 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| | || | || || || || ||||| || || || |||||||| Sbjct 575528 CCTCTAAAGTGATTGTCTTTCCGGTGAGAGTCTTGACGAAGATCTGCAT 575576 >seq34 Length=376069 Score = 100 bits (110), Expect = 3e-16 Identities = 163/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| || || || || | | ||||||||||| |||||||||||| Sbjct 166305 CCACCACGGAGACGTAACACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAA 166364 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||||||||||| || |||| |||| | ||||||||||| || || Sbjct 166365 AGGGTGCGGCCATCCTCGAGTTGCTTTCCGGCGAAGATCAATCGCTGTTGGTCGGGTGGA 166424 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || ||||| ||| || || | |||| || | |||||| | ||||| || Sbjct 166425 ATTCCCTCCTTGTCTTGGATCTTGGCCTTGACATTG-TCGATGGTGTCCGAAGACTCAAC 166483 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGGCT 138618 ||||| || | ||||| || || || || || || || ||||||||| || Sbjct 166484 CTCGAGGGTGATAGTTTTGCCCGTGAGGGTCTTGACGAAGATCTGCATGACT 166535 >seq3 Length=2126074 Score = 86.0 bits (94), Expect = 6e-12 Identities = 153/221 (69%), Gaps = 2/221 (1%) Strand=Plus/Plus Query 154314 GTTCCCGCCGAAAAGAGGGTGGGACTCGCGTGCGTAAAC-AGTTTTTGGCTCATCATGCG 154372 || ||||| |||||||| || || || || ||||| | || || | ||||| | Sbjct 692163 GTACCCGCAGAAAAGAGCGTTGGGGAAGCATGTGTAAAGTACTTGTTTGA-CATCAAGTT 692221 Query 154373 GTACGTTTCGATGGCGTCTTCGATATCATCGCCGTGAATGCCGAGCGCGACGCGCATGAG 154432 ||| |||||||| || |||||||||||| |||||||| || | || || ||||||| Sbjct 692222 GTATGTTTCGATAGCACTTTCGATATCATCACCGTGAATACCCACGGCAACACGCATGAT 692281 Query 154433 CATGTGCTGCGGACGTTCGGCGACTCTATTGTCAATCTTCAAGAGATATCCATTTTCGAG 154492 ||| || || ||||| || || ||| || |||| || |||||| || || Sbjct 692282 CATTTGTTGAGGACGCTCCGCAACTTTACCATCAAGACGTAAAAGATATGATCGCTCAAG 692341 Query 154493 GGTTTTGTAACCGAAATACTTGTATTCAAAATCTAGCTCAT 154533 ||| ||| | ||||| || | ||| | ||||| | |||| Sbjct 692342 GGTCTTGAACCCGAAGTATTGGTAGTTGAAATCCCGGTCAT 692382 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496258535356560