Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20glacialis_20[genbank_20GCA_5F002162575.1_202017-05-31] 623 sequences; 41,098,534 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq18 107 1e-18 seq34 89.7 4e-13 >seq18 Length=877782 Score = 107 bits (118), Expect = 1e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 14986 TCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTAT 15045 || ||||| ||||||||||| ||| |||| |||| || || || || |||||| | Sbjct 575158 TCCTTTTGAATGTTGTAATCCAAAAGAGTTCTGCCGTCCTCCAACTGCTTTCCAGCGAAG 575217 Query 15046 ATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATT 15105 ||||| |||||||| || |||||| || ||||| || ||| || || ||| | Sbjct 575218 ATCAATCGCTGTTGATCAGGTGGAATGCCCTCCTTATCCTGAATCTTAGCCTTGACATTA 575277 Query 15106 TCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACA 15165 || |||||||| | |||||| ||||| || || || || || |||| || || ||| Sbjct 575278 TCAATAGTATCCGAAGATTCTACCTCTAATGTGATAGTCTTTCCAGTCAAGGTCTTAACA 575337 Query 15166 AAAATTTGCATA 15177 || ||||||||| Sbjct 575338 AAGATTTGCATA 575349 Score = 89.7 bits (98), Expect = 4e-13 Identities = 129/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 |||||| || || || || || |||||||| || ||| | | | ||||| | ||| Sbjct 575885 ATGAAGTGTGGACTCCTTCTGAATGTTGTAGTCTGAGAGGGTGCGACCATCTTCAAGTTG 575944 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 ||||| ||| | |||||||||||||| ||| ||||| || |||||||| || || Sbjct 575945 CTTGCCTGCGAAAATCAAACGCTGTTGATCGGGAGGAATCCCCTCCTTGTCTTGGATCTT 576004 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 | ||| ||| | || ||||| ||||| || || || | ||| ||||| || || || Sbjct 576005 GGCTTTGACATTGTCAATAGTGTCGCTGGACTCGACCTCAAGGGTGATGGTCTTTCCAGT 576064 Query 15153 CA 15154 || Sbjct 576065 CA 576066 >seq34 Length=376069 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || | | ||| || || ||||| || || || ||||| |||||||| ||| Sbjct 166305 CCACCACGGAGACGTAACACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAA 166364 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || | | | || || | ||| || || ||| | ||||| |||||||||||| |||| Sbjct 166365 AGGGTGCGGCCATCCTCGAGTTGCTTTCCGGCGAAGATCAATCGCTGTTGGTCGGGTGGA 166424 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 ||||| |||||||| || ||| || ||| | || || || || | || || Sbjct 166425 ATTCCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTGTCCGAAGACTCAACC 166484 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || | ||| || ||||| || || || || || || || || ||||| Sbjct 166485 TCGAGGGTGATAGTTTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 166531 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357389286389555