Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20glacialis_20[genbank_20GCA_5F002162575.1_202017-05-31]
623 sequences; 41,098,534 total letters
Query= NC_011423.1
Length=111724
Score E
Sequences producing significant alignments: (Bits) Value
seq18 107 1e-18
seq34 89.7 4e-13
>seq18
Length=877782
Score = 107 bits (118), Expect = 1e-18
Identities = 139/192 (72%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 14986 TCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTAT 15045
|| ||||| ||||||||||| ||| |||| |||| || || || || |||||| |
Sbjct 575158 TCCTTTTGAATGTTGTAATCCAAAAGAGTTCTGCCGTCCTCCAACTGCTTTCCAGCGAAG 575217
Query 15046 ATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATT 15105
||||| |||||||| || |||||| || ||||| || ||| || || ||| |
Sbjct 575218 ATCAATCGCTGTTGATCAGGTGGAATGCCCTCCTTATCCTGAATCTTAGCCTTGACATTA 575277
Query 15106 TCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACA 15165
|| |||||||| | |||||| ||||| || || || || || |||| || || |||
Sbjct 575278 TCAATAGTATCCGAAGATTCTACCTCTAATGTGATAGTCTTTCCAGTCAAGGTCTTAACA 575337
Query 15166 AAAATTTGCATA 15177
|| |||||||||
Sbjct 575338 AAGATTTGCATA 575349
Score = 89.7 bits (98), Expect = 4e-13
Identities = 129/182 (71%), Gaps = 0/182 (0%)
Strand=Plus/Plus
Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032
|||||| || || || || || |||||||| || ||| | | | ||||| | |||
Sbjct 575885 ATGAAGTGTGGACTCCTTCTGAATGTTGTAGTCTGAGAGGGTGCGACCATCTTCAAGTTG 575944
Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092
||||| ||| | |||||||||||||| ||| ||||| || |||||||| || ||
Sbjct 575945 CTTGCCTGCGAAAATCAAACGCTGTTGATCGGGAGGAATCCCCTCCTTGTCTTGGATCTT 576004
Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152
| ||| ||| | || ||||| ||||| || || || | ||| ||||| || || ||
Sbjct 576005 GGCTTTGACATTGTCAATAGTGTCGCTGGACTCGACCTCAAGGGTGATGGTCTTTCCAGT 576064
Query 15153 CA 15154
||
Sbjct 576065 CA 576066
>seq34
Length=376069
Score = 89.7 bits (98), Expect = 4e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009
||||| || | | ||| || || ||||| || || || ||||| |||||||| |||
Sbjct 166305 CCACCACGGAGACGTAACACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAA 166364
Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069
|| | | | || || | ||| || || ||| | ||||| |||||||||||| ||||
Sbjct 166365 AGGGTGCGGCCATCCTCGAGTTGCTTTCCGGCGAAGATCAATCGCTGTTGGTCGGGTGGA 166424
Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129
||||| |||||||| || ||| || ||| | || || || || | || ||
Sbjct 166425 ATTCCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTGTCCGAAGACTCAACC 166484
Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
|| | ||| || ||||| || || || || || || || || |||||
Sbjct 166485 TCGAGGGTGATAGTTTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 166531
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 357389286389555
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |