Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20glacialis_20[genbank_20GCA_5F002162575.1_202017-05-31]
623 sequences; 41,098,534 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq34 138 1e-27
seq9 113 5e-20
seq18 102 8e-17
seq5 102 8e-17
>seq34
Length=376069
Score = 138 bits (152), Expect = 1e-27
Identities = 160/216 (74%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || |||||||||||||| |||||| |||| || ||| | |
Sbjct 166531 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAAACTATCACCCTCGAGGTTGAGTCTTCG 166472
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|||| | | | | | || | || |||| ||||| ||||||||||| ||||||||
Sbjct 166471 GACACCATCGACAATGTCAAGGCCAAGATCCAAGACAAGGAGGGAATTCCACCCGACCAA 166412
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||||| | || | ||| || || || || || || | |||||||| ||||||||||
Sbjct 166411 CAGCGATTGATCTTCGCCGGAAAGCAACTCGAGGATGGCCGCACCCTTTCCGACTACAAC 166352
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459
||||||||||| | || || || |||||| | |||
Sbjct 166351 ATCCAAAAGGAGTCCACTCTTCACTTGGTGTTACGT 166316
>seq9
Length=1212739
Score = 113 bits (124), Expect = 5e-20
Identities = 191/276 (69%), Gaps = 3/276 (1%)
Strand=Plus/Minus
Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226
||| ||||||||||| || || |||| ||||| | ||||||||| || ||| ||
Sbjct 165144 GTATGTGTCGATGAGAAGAGAGTATGTTTCGGAGTGGATGTTCTCCATCATGACTTGGAA 165085
Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATT 133286
||||| ||| | || ||||| | | || ||||| | | ||| | | ||| | ||
Sbjct 165084 ACCGTAGAAGAATCGTGCCTCTGCAATTTGAACTTCATTACTGAATCTCGAGACTAAGTT 165025
Query 133287 TTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCG 133346
|||||||| || || ||| || ||||| || || || ||||| |||||| | ||
Sbjct 165024 CTCGTTGACAATTCCATCGGATGCTGCGAAGAATGCGAGAACGTGAGAGATGAAGTAACG 164965
Query 133347 CTCGTTGTCGTT---CAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTC 133403
||||| ||| || | | | ||| ||| | ||||| |||| ||| | ||| ||
Sbjct 164964 CTCGTCGTCATTGAGCCTGTTATTCCAATCGTGAAGATCCTTTGACAAGTCAATCTCTTC 164905
Query 133404 GACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439
||||||| || || ||||| || |||||||||||
Sbjct 164904 TGCGGTCCAGAAGGAGGCCTCTGCCTTTTTGTACAT 164869
>seq18
Length=877782
Score = 102 bits (112), Expect = 8e-17
Identities = 137/191 (72%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 38268 ACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCAAACGCTTAAAGAA 38327
|| || || ||||||||| | || |||||| ||| ||||| | | | | ||||
Sbjct 576064 ACTGGAAAGACCATCACCCTTGAGGTCGAGTCCAGCGACACTATTGACAATGTCAAAGCC 576005
Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387
|| |||| ||||| ||||| ||||| |||| |||||||| | |||| ||| |||||
Sbjct 576004 AAGATCCAAGACAAGGAGGGGATTCCTCCCGATCAACAGCGTTTGATTTTCGCAGGCAAG 575945
Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447
|| || || || | ||||||||| ||||||||||| || ||||| | || || |||
Sbjct 575944 CAACTTGAAGATGGTCGCACCCTCTCAGACTACAACATTCAGAAGGAGTCCACACTTCAT 575885
Query 38448 TTGGTGCTGCG 38458
| || || ||
Sbjct 575884 CTCGTCCTCCG 575874
Score = 96.9 bits (106), Expect = 3e-15
Identities = 147/207 (71%), Gaps = 2/207 (1%)
Strand=Plus/Minus
Query 38250 ATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGC 38309
||| |||| || || ||||| || || ||||||||| |||| || || | | || |
Sbjct 575798 ATAGTCGTTAAGACCCTCACCGGAAAGACCATCACCCTCGAGGTTGAATCTTCTGATACT 575739
Query 38310 GTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCG 38368
| | |||| | |||| || || | ||||||||||| || || |||||||||| ||
Sbjct 575738 ATCGATAACG-TCAAAGCCAAGATTCAAGACAAAGAGGGCATCCCACCCGACCAACAACG 575680
Query 38369 GCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCA 38428
| |||| ||| || || || || || || | || |||||| ||||| ||||||||
Sbjct 575679 TTTGATTTTCGCCGGAAAGCAACTTGAGGATGGTCGTACCCTCTCAGACTATAACATCCA 575620
Query 38429 AAAGGAAGCGACGCTGCATTTGGTGCT 38455
||||| | || || |||||||| ||
Sbjct 575619 GAAGGAGTCTACTCTCCATTTGGTTCT 575593
Score = 84.2 bits (92), Expect = 2e-11
Identities = 148/216 (69%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || ||||| || || || ||||| | || || ||| | |
Sbjct 575576 ATGCAGATCTTCGTCAAGACTCTCACCGGAAAGACAATCACTTTAGAGGTTGAGTCGTCG 575517
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|| | | | | | | || | || || | ||||||||||| || || | ||||||
Sbjct 575516 GATACCATCGACAATGTGAAGGCTAAGATTCAAGACAAAGAGGGTATCCCACCTGACCAA 575457
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
|| || || || | || || || || || || || | || || || ||||||||||
Sbjct 575456 CAACGTCTTATCTTTGCTGGTAAGCAACTTGAGGATGGCCGAACTCTTTCCGACTACAAC 575397
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459
|||||||| ||| | || | |||||||| || |||
Sbjct 575396 ATCCAAAAAGAATCAACTTTACATTTGGTCCTTCGT 575361
>seq5
Length=1928780
Score = 102 bits (112), Expect = 8e-17
Identities = 131/181 (72%), Gaps = 0/181 (0%)
Strand=Plus/Minus
Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312
||||| || || || |||||||| ||||||||| | || |||||| || | |||| |
Sbjct 1275303 TTCGTCAAGACCCTTACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCTGACACTATC 1275244
Query 38313 CAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372
| | |||| | || |||| ||||| |||||||||||| |||| ||||| || |
Sbjct 1275243 GACAATGTTAAGGCTAAGATCCAAGACAAGGAGGGAATTCCCCCCGATCAACAACGTTTG 1275184
Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432
|| | ||| || || || || || |||| || || || || |||||||||||||||
Sbjct 1275183 ATCTTCGCTGGAAAGCAACTTGAGGACGGACGTACTCTTTCAGATTACAACATCCAAAAG 1275124
Query 38433 G 38433
|
Sbjct 1275123 G 1275123
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500168904904320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |