Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20glacialis_20[genbank_20GCA_5F002162575.1_202017-05-31]
623 sequences; 41,098,534 total letters
Query= NC_014637.1
Length=617453
Score E
Sequences producing significant alignments: (Bits) Value
seq5 104 9e-17
seq18 102 3e-16
>seq5
Length=1928780
Score = 104 bits (114), Expect = 9e-17
Identities = 140/194 (72%), Gaps = 1/194 (1%)
Strand=Plus/Minus
Query 391046 TATAATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATC 391105
|||||| |||| ||||| || || || || || || || || || ||||| || || ||
Sbjct 1275315 TATAAT-AATAGCTTCGTCAAGACCCTTACGGGCAAGACCATCACCCTTGAGGTCGAGTC 1275257
Query 391106 ATCTGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGA 391165
||||| | || || | |||| || || ||||| ||||| |||||||| || ||
Sbjct 1275256 CTCTGACACTATCGACAATGTTAAGGCTAAGATCCAAGACAAGGAGGGAATTCCCCCCGA 1275197
Query 391166 TCAACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTA 391225
|||||||||||| || ||| | || || |||||||| || ||| | ||| | | |||||
Sbjct 1275196 TCAACAACGTTTGATCTTCGCTGGAAAGCAACTTGAGGACGGACGTACTCTTTCAGATTA 1275137
Query 391226 TAATATTGATAAGG 391239
|| || | ||||
Sbjct 1275136 CAACATCCAAAAGG 1275123
>seq18
Length=877782
Score = 102 bits (112), Expect = 3e-16
Identities = 131/181 (72%), Gaps = 0/181 (0%)
Strand=Plus/Minus
Query 391072 TGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGATAACATTGAAGCTATTAAAC 391131
||||||| || || || || ||||| || || || || | ||||| | | |||
Sbjct 576066 TGACTGGAAAGACCATCACCCTTGAGGTCGAGTCCAGCGACACTATTGACAATGTCAAAG 576007
Query 391132 AAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGTTTAATTTTCTCAGGGA 391191
|| || ||||| ||||| || |||||||| |||||||| ||||| |||||| |||| |
Sbjct 576006 CCAAGATCCAAGACAAGGAGGGGATTCCTCCCGATCAACAGCGTTTGATTTTCGCAGGCA 575947
Query 391192 AACAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATTGATAAGGATGCAACACTTC 391251
| |||||||||||||| | || | | || || || ||| | ||||| | |||||||
Sbjct 575946 AGCAACTTGAAGATGGTCGCACCCTCTCAGACTACAACATTCAGAAGGAGTCCACACTTC 575887
Query 391252 A 391252
|
Sbjct 575886 A 575886
Score = 96.9 bits (106), Expect = 1e-14
Identities = 136/191 (71%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109
||| | || || ||||| || ||||||| || ||||| || | || || ||||| ||
Sbjct 575348 ATGCAAATCTTTGTTAAGACCTTGACTGGAAAGACTATCACATTAGAGGTAGAATCTTCG 575289
Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169
|||| ||||| | | || || ||||| |||||||| || ||||| |||||||||
Sbjct 575288 GATACTATTGATAATGTCAAGGCTAAGATTCAGGATAAGGAGGGCATTCCACCTGATCAA 575229
Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229
|| || || || ||| | || || || | || || || |||||| | |||||| ||
Sbjct 575228 CAGCGATTGATCTTCGCTGGAAAGCAGTTGGAGGACGGCAGAACTCTTTTGGATTACAAC 575169
Query 391230 ATTGATAAGGA 391240
||| | |||||
Sbjct 575168 ATTCAAAAGGA 575158
Score = 96.9 bits (106), Expect = 1e-14
Identities = 146/208 (70%), Gaps = 0/208 (0%)
Strand=Plus/Minus
Query 391060 TCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGATAACATTG 391119
||||||| || || || || || || || || || || |||||||| ||||||| || |
Sbjct 575794 TCGTTAAGACCCTCACCGGAAAGACCATCACCCTCGAGGTTGAATCTTCTGATACTATCG 575735
Query 391120 AAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGTTTAA 391179
| | ||| || |||||||| || || || || || || || ||||||||||| |
Sbjct 575734 ATAACGTCAAAGCCAAGATTCAAGACAAAGAGGGCATCCCACCCGACCAACAACGTTTGA 575675
Query 391180 TTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATTGATAAGG 391239
||||| | || || |||||||| ||||| | || | | || ||||| || | ||||
Sbjct 575674 TTTTCGCCGGAAAGCAACTTGAGGATGGTCGTACCCTCTCAGACTATAACATCCAGAAGG 575615
Query 391240 ATGCAACACTTCACTTAGTATTAAGACT 391267
| | || || || || || | |||||
Sbjct 575614 AGTCTACTCTCCATTTGGTTCTCAGACT 575587
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1975702629445284
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |