Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20glacialis_20[genbank_20GCA_5F002162575.1_202017-05-31] 623 sequences; 41,098,534 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq18 161 8e-34 seq6 116 3e-20 >seq18 Length=877782 Score = 161 bits (178), Expect = 8e-34 Identities = 460/700 (66%), Gaps = 8/700 (1%) Strand=Plus/Plus Query 518015 ACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACT 518074 |||||||| || || || || ||||| ||||| | ||| | || | || | | || Sbjct 666250 ACAAGACGGTTGTCGAAGTCCTCACCACCCAAGTGAGTGTCACCAGCGGTGGACTTGACC 666309 Query 518075 TGGAAAAGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCA 518134 | ||| | || || |||| | |||||||| ||||| ||||| ||||| | ||| Sbjct 666310 TCGAAGATACCCTCCTCAATGGTCAAAAGAGAGACATCGAAAGTTCCTCCACCAAGATCG 666369 Query 518135 AAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCA 518194 || || || || || || || || || || | ||| || |||| ||||| Sbjct 666370 AAGATGAGAACGTTACGCTCACCCTCAATCTTCTTGTCCAAACCGTAAGCAATGGCAGCT 666429 Query 518195 GCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTA 518254 || || ||||| || || || | | ||| || ||||||||||| || ||||| || Sbjct 666430 GCGGTAGGTTCGTTGATGATACGGAGAACGTTGAGACCAGCAATGAGACCGGCATCCTTG 666489 Query 518255 GTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTAC- 518313 || ||||| | |||||||||| | || || || || || || | ||||| | | || Sbjct 666490 GTAGCTTGACGTTGTGAATCGGTGAAGTAAGCTGGGACTGTGACGACGGCGTTGTTGACG 666549 Query 518314 -TTCTTTACCAATATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAA 518372 ||| | |||| ||||| || || | |||| || || ||||| || || | Sbjct 666550 GTTCCT--CCAAGGTAAGCCTCAGCTGTCTCCCTCATCTTGACCAAGATCATAGAAGAGA 666607 Query 518373 TTTGTTCTGGGGAATATTGCTTGGATTCATT-TTGATATGATACTTCAAAATATGGTTTA 518431 ||| |||||| | ||||||| | || |||| | | || || | | ||| || Sbjct 666608 TTTCTTCTGGTGTGAATTGCTTAGTCTCGCCCTTGAACTCA-ACCTCGATAACTGGCTTT 666666 Query 518432 TTACCAACATTAATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGG-TC 518490 || | || || || || || ||| |||||||| | |||||| || | || Sbjct 666667 CCGGCACGGTCGATGACCTTGAAGGGGAAGTGCTTCATATCGGCTTGAAC-CTCAGCATC 666725 Query 518491 ATTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGC 518550 || | | |||||| || || || ||||| || | || ||| |||| || || || Sbjct 666726 TGCGAACTTGCGACCAATCAAACGCTTAGCATCGAAGACGGTGTTGATTGGGTTCATGGC 666785 Query 518551 AGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGA 518610 |||| | ||||| |||||||| |||| | | || || ||||| || | ||| | || Sbjct 666786 GACTTGGTTCTTGGCGGCATCTCCGATCAAACGCTCGGTATCTGTGAAGGCAACGAAGGA 666845 Query 518611 TGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATAC 518670 || || || ||||| |||||||| || || |||||||| | | || ||| | | | Sbjct 666846 AGGTGTGGTACGATTTCCTTGATCGTTGGCGATAATTTCGATTCTATCATCACGGAAGAT 666905 Query 518671 ACCTACACAACTAAAAGTTGTTCCTAAATCAATACCAATA 518710 ||| ||||| | || || || ||||||||||||||| Sbjct 666906 ACCCACACAGGAGTATGTGGTACCCAAATCAATACCAATA 666945 Score = 104 bits (114), Expect = 2e-16 Identities = 245/368 (67%), Gaps = 3/368 (1%) Strand=Plus/Plus Query 517274 ATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGT 517333 || || || ||||| | ||| || || || ||||||||||| || || | | |||||| Sbjct 665246 ATTCCGTTTGCATCAAGATCGAAGGTAACCTCAATTTGAGGAACACCACGTGGTGCAGGT 665305 Query 517334 GGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCA 517393 ||||| || | | ||| | |||| || || || || ||| || |||||| Sbjct 665306 GGGATACCAGTGAGCTCGAATTTACCCAAGAGGTTGTTGTCCTTGGTGCGTTGACGTTCA 665365 Query 517394 CCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTG 517453 |||||||| | ||| || || ||| ||| || || || | || | || || | Sbjct 665366 CCCTCGAAGACTTGAATGAGGACACCAGGTTGGTTGTCGGAGAAGGTAGAGAAGACCTCG 665425 Query 517454 GATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCTGCT 517513 || || || || || || |||||||| ||| | |||||||| ||||| || Sbjct 665426 GACTTCTTGGTTGGGATGGTGGTGTTTCTTGGAATGAGCTTGGTCATTTGTCCACCAGCA 665485 Query 517514 GTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATAT--TTTGAAGTTTTT 517571 || || | ||| ||||| | || | |||||| | |||| || | || | | || Sbjct 665486 GTCTCGATACCGAGAGACAATGGCGCGACATCGAGAAGGAGGATCTCGTTGGTGGACTTG 665545 Query 517572 CATCAGTT-TGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCA 517630 | || | | |||| |||||||| || |||| |||||||| ||||||||||| ||| Sbjct 665546 GAGGAGGTGTCACCAGAGAGAATAGCAGCCTGAACGGCAGCACCGTATGCAACAGCCTCA 665605 Query 517631 TCAGGATT 517638 ||||| || Sbjct 665606 TCAGGGTT 665613 >seq6 Length=1347266 Score = 116 bits (128), Expect = 3e-20 Identities = 165/230 (72%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 668855 GGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAACGTGTCGATATGTCTGCACGT 668914 ||||| ||||||||| | | ||||||||||||||||| |||||||| | ||||| ||| Sbjct 901892 GGTAAGGAAGGTCGTCTCCGTGGAAATTTGATGGGAAAGCGTGTCGACTTTTCTGCTCGT 901951 Query 668915 ACAGTTATTACTTCTGATCCCAATATTGCTCTCAATGAAGTTGGTGTTCCTCTTATTATT 668974 || ||||| ||| |||||||||| | | || |||| ||||| ||||||| | ||| Sbjct 901952 ACCGTTATCACTGGTGATCCCAATCTCTCCCTAGATGAGGTTGGAGTTCCTCGAAGCATT 902011 Query 668975 GCTAAAAATCTTACTTTTGACGAAATTGTAACAGAACATAATATTGAGTATTTGACTCAA 669034 || | || ||| || | | || | ||| ||| || || || || | ||| ||| Sbjct 902012 GCGAGAATTCTCACATATCCGGAGACTGTTACACCACTAAACATCGATAAATTGCATCAG 902071 Query 669035 TTAGTGAAAAATGGT--AAAAGAGTATATCCGGGTGCCAATTTTGTAATC 669082 | || ||||||||| | ||| |||| |||||||| | ||| ||| Sbjct 902072 CTTGTCAAAAATGGTCCCGATGAG--CATCCTGGTGCCAAGTATGTCATC 902119 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780791484687838