Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20glacialis_20[genbank_20GCA_5F002162575.1_202017-05-31]
623 sequences; 41,098,534 total letters
Query= NC_014649.1
Length=1181549
Score E
Sequences producing significant alignments: (Bits) Value
seq18 161 8e-34
seq6 116 3e-20
>seq18
Length=877782
Score = 161 bits (178), Expect = 8e-34
Identities = 460/700 (66%), Gaps = 8/700 (1%)
Strand=Plus/Plus
Query 518015 ACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACT 518074
|||||||| || || || || ||||| ||||| | ||| | || | || | | ||
Sbjct 666250 ACAAGACGGTTGTCGAAGTCCTCACCACCCAAGTGAGTGTCACCAGCGGTGGACTTGACC 666309
Query 518075 TGGAAAAGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCA 518134
| ||| | || || |||| | |||||||| ||||| ||||| ||||| | |||
Sbjct 666310 TCGAAGATACCCTCCTCAATGGTCAAAAGAGAGACATCGAAAGTTCCTCCACCAAGATCG 666369
Query 518135 AAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCA 518194
|| || || || || || || || || || | ||| || |||| |||||
Sbjct 666370 AAGATGAGAACGTTACGCTCACCCTCAATCTTCTTGTCCAAACCGTAAGCAATGGCAGCT 666429
Query 518195 GCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTA 518254
|| || ||||| || || || | | ||| || ||||||||||| || ||||| ||
Sbjct 666430 GCGGTAGGTTCGTTGATGATACGGAGAACGTTGAGACCAGCAATGAGACCGGCATCCTTG 666489
Query 518255 GTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTAC- 518313
|| ||||| | |||||||||| | || || || || || || | ||||| | | ||
Sbjct 666490 GTAGCTTGACGTTGTGAATCGGTGAAGTAAGCTGGGACTGTGACGACGGCGTTGTTGACG 666549
Query 518314 -TTCTTTACCAATATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAA 518372
||| | |||| ||||| || || | |||| || || ||||| || || |
Sbjct 666550 GTTCCT--CCAAGGTAAGCCTCAGCTGTCTCCCTCATCTTGACCAAGATCATAGAAGAGA 666607
Query 518373 TTTGTTCTGGGGAATATTGCTTGGATTCATT-TTGATATGATACTTCAAAATATGGTTTA 518431
||| |||||| | ||||||| | || |||| | | || || | | ||| ||
Sbjct 666608 TTTCTTCTGGTGTGAATTGCTTAGTCTCGCCCTTGAACTCA-ACCTCGATAACTGGCTTT 666666
Query 518432 TTACCAACATTAATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGG-TC 518490
|| | || || || || || ||| |||||||| | |||||| || | ||
Sbjct 666667 CCGGCACGGTCGATGACCTTGAAGGGGAAGTGCTTCATATCGGCTTGAAC-CTCAGCATC 666725
Query 518491 ATTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGC 518550
|| | | |||||| || || || ||||| || | || ||| |||| || || ||
Sbjct 666726 TGCGAACTTGCGACCAATCAAACGCTTAGCATCGAAGACGGTGTTGATTGGGTTCATGGC 666785
Query 518551 AGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGA 518610
|||| | ||||| |||||||| |||| | | || || ||||| || | ||| | ||
Sbjct 666786 GACTTGGTTCTTGGCGGCATCTCCGATCAAACGCTCGGTATCTGTGAAGGCAACGAAGGA 666845
Query 518611 TGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATAC 518670
|| || || ||||| |||||||| || || |||||||| | | || ||| | | |
Sbjct 666846 AGGTGTGGTACGATTTCCTTGATCGTTGGCGATAATTTCGATTCTATCATCACGGAAGAT 666905
Query 518671 ACCTACACAACTAAAAGTTGTTCCTAAATCAATACCAATA 518710
||| ||||| | || || || |||||||||||||||
Sbjct 666906 ACCCACACAGGAGTATGTGGTACCCAAATCAATACCAATA 666945
Score = 104 bits (114), Expect = 2e-16
Identities = 245/368 (67%), Gaps = 3/368 (1%)
Strand=Plus/Plus
Query 517274 ATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGT 517333
|| || || ||||| | ||| || || || ||||||||||| || || | | ||||||
Sbjct 665246 ATTCCGTTTGCATCAAGATCGAAGGTAACCTCAATTTGAGGAACACCACGTGGTGCAGGT 665305
Query 517334 GGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCA 517393
||||| || | | ||| | |||| || || || || ||| || ||||||
Sbjct 665306 GGGATACCAGTGAGCTCGAATTTACCCAAGAGGTTGTTGTCCTTGGTGCGTTGACGTTCA 665365
Query 517394 CCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTG 517453
|||||||| | ||| || || ||| ||| || || || | || | || || |
Sbjct 665366 CCCTCGAAGACTTGAATGAGGACACCAGGTTGGTTGTCGGAGAAGGTAGAGAAGACCTCG 665425
Query 517454 GATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCTGCT 517513
|| || || || || || |||||||| ||| | |||||||| ||||| ||
Sbjct 665426 GACTTCTTGGTTGGGATGGTGGTGTTTCTTGGAATGAGCTTGGTCATTTGTCCACCAGCA 665485
Query 517514 GTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATAT--TTTGAAGTTTTT 517571
|| || | ||| ||||| | || | |||||| | |||| || | || | | ||
Sbjct 665486 GTCTCGATACCGAGAGACAATGGCGCGACATCGAGAAGGAGGATCTCGTTGGTGGACTTG 665545
Query 517572 CATCAGTT-TGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCA 517630
| || | | |||| |||||||| || |||| |||||||| ||||||||||| |||
Sbjct 665546 GAGGAGGTGTCACCAGAGAGAATAGCAGCCTGAACGGCAGCACCGTATGCAACAGCCTCA 665605
Query 517631 TCAGGATT 517638
||||| ||
Sbjct 665606 TCAGGGTT 665613
>seq6
Length=1347266
Score = 116 bits (128), Expect = 3e-20
Identities = 165/230 (72%), Gaps = 4/230 (2%)
Strand=Plus/Plus
Query 668855 GGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAACGTGTCGATATGTCTGCACGT 668914
||||| ||||||||| | | ||||||||||||||||| |||||||| | ||||| |||
Sbjct 901892 GGTAAGGAAGGTCGTCTCCGTGGAAATTTGATGGGAAAGCGTGTCGACTTTTCTGCTCGT 901951
Query 668915 ACAGTTATTACTTCTGATCCCAATATTGCTCTCAATGAAGTTGGTGTTCCTCTTATTATT 668974
|| ||||| ||| |||||||||| | | || |||| ||||| ||||||| | |||
Sbjct 901952 ACCGTTATCACTGGTGATCCCAATCTCTCCCTAGATGAGGTTGGAGTTCCTCGAAGCATT 902011
Query 668975 GCTAAAAATCTTACTTTTGACGAAATTGTAACAGAACATAATATTGAGTATTTGACTCAA 669034
|| | || ||| || | | || | ||| ||| || || || || | ||| |||
Sbjct 902012 GCGAGAATTCTCACATATCCGGAGACTGTTACACCACTAAACATCGATAAATTGCATCAG 902071
Query 669035 TTAGTGAAAAATGGT--AAAAGAGTATATCCGGGTGCCAATTTTGTAATC 669082
| || ||||||||| | ||| |||| |||||||| | ||| |||
Sbjct 902072 CTTGTCAAAAATGGTCCCGATGAG--CATCCTGGTGCCAAGTATGTCATC 902119
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3780791484687838
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |