Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20glacialis_20[genbank_20GCA_5F002162575.1_202017-05-31]
623 sequences; 41,098,534 total letters
Query= NC_015280.1
Length=181044
Score E
Sequences producing significant alignments: (Bits) Value
seq9 138 1e-27
>seq9
Length=1212739
Score = 138 bits (152), Expect = 1e-27
Identities = 270/392 (69%), Gaps = 9/392 (2%)
Strand=Plus/Minus
Query 154719 TGTTTGATACCAGAGTCAGCACATGGAACTAATCCTGCTAGTGCTGTCATGGCAGGGATG 154778
|| ||||| |||| || || ||||| || || ||||| |||| |||||||| |||
Sbjct 192528 TGCTTGATTCCAGTTTCTGCTCATGGTACCAACCCTGCATCAGCTGCTATGGCAGGTATG 192469
Query 154779 AAAGTTGTAGGTGTCAAGTGTGA--TGATGA-TGGTAACATAGACATCAAAGATCTAGAG 154835
||||| || || ||||| | | | ||| || | ||||| ||||| ||
Sbjct 192468 CGTGTTGTCACAGTGAAATGTGACATCAAGTCTGGCAATCTTGACATGGCTGATCTTAAG 192409
Query 154836 AAGAAAGCAATCATGAATACATTT--GAACTGTCATGTATTATGATTACATACCCATCTA 154893
||||| | | |||| | ||||| | ||| ||||| ||||||||| ||
Sbjct 192408 GAGAAATG--TGAAAAATATAGCGAGGAACTTGGAGCTATCATGATCACATACCCAAGTA 192351
Query 154894 CACATGGTGTATTTGAAACTAACATTA-GACAGATATGTAAGATCGTTCATGACAATGGT 154952
|| ||||||||||||| | | ||| | | | |||| | || |||||| | |||||
Sbjct 192350 CATTTGGTGTATTTGAACCGGAAGTTAAGGCTGC-ATGTGATATTGTTCATCAACATGGT 192292
Query 154953 GGTCAGGTATATCTTGATGGAGCAAATCTAAATGCACAGGTAGGACTAGCAAAACCATGT 155012
||||| ||||| | || || || ||| | ||||| || | ||| | ||| ||
Sbjct 192291 GGTCAAGTATACATGGACGGTGCCAATATGAATGCTCAAATTGGATTGTGTTCACCTGGT 192232
Query 155013 GAGTATGGTGCAGATGTATGTCATCTAAACTTACATAAAACATTCTGTATTCCACATGGA 155072
||| |||||| |||||||||||||| ||| | || || |||||||| ||||| |||||
Sbjct 192231 GAGATTGGTGCCGATGTATGTCATCTTAACCTTCACAAGACATTCTGCATTCCTCATGGT 192172
Query 155073 GGTGGAGGTCCTGGCGTAGGTCCTATAGGTGT 155104
||||| || || || || ||||| || |||||
Sbjct 192171 GGTGGTGGACCAGGTGTTGGTCCAATTGGTGT 192140
Score = 127 bits (140), Expect = 2e-24
Identities = 184/260 (71%), Gaps = 0/260 (0%)
Strand=Plus/Minus
Query 153768 CAAAGGTTTGGTATTCCTATGGGATATGGAGGTCCTCATGCTGCATTCTTTGCAACAACA 153827
||| | ||||| |||| | || ||||| ||||| |||||||| ||||| ||
Sbjct 193545 CAACGTTTTGGAGTTCCATTCGGTTATGGTGGTCCCCATGCTGCTTTCTTCGCTGTTGGC 193486
Query 153828 GACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAGGTCAGTCAGTAGATAGTGAAGGT 153887
|| |||||||||||||| | || || | | | ||| || |||||| |||
Sbjct 193485 GATAAGTATAAGAGAAAAACCCCAGGACGTCTCATTGGTGTATCGAAAGATAGGCTAGGG 193426
Query 153888 AATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGGAGAGACAAAGCA 153947
|||||||| ||||| || |||| |||||||| |||||||| | ||||| || ||
Sbjct 193425 GATAAAGCAATGAGATTGGCTTTACAAACTAGAGAACAGCATATTCGCAGAGAAAAGGCT 193366
Query 153948 ACCAGTAACATCTGCACAGCTCAGGCACTGCTGGCTAATATGTCTGGATTCTATGCAGCA 154007
|| ||||| | ||||| ||||| ||| || |||| || ||| || |||||||||||
Sbjct 193365 ACTAGTAATGTGTGCACTGCTCAAGCATTGTTGGCCAACATGAGTGCATTCTATGCAGTT 193306
Query 154008 TATCATGGTGCAGATGGACT 154027
|| || || |||| |||||
Sbjct 193305 TACCACGGCCCAGAAGGACT 193286
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 579208289380320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |