Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20glacialis_20[genbank_20GCA_5F002162575.1_202017-05-31] 623 sequences; 41,098,534 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq9 138 1e-27 >seq9 Length=1212739 Score = 138 bits (152), Expect = 1e-27 Identities = 270/392 (69%), Gaps = 9/392 (2%) Strand=Plus/Minus Query 154719 TGTTTGATACCAGAGTCAGCACATGGAACTAATCCTGCTAGTGCTGTCATGGCAGGGATG 154778 || ||||| |||| || || ||||| || || ||||| |||| |||||||| ||| Sbjct 192528 TGCTTGATTCCAGTTTCTGCTCATGGTACCAACCCTGCATCAGCTGCTATGGCAGGTATG 192469 Query 154779 AAAGTTGTAGGTGTCAAGTGTGA--TGATGA-TGGTAACATAGACATCAAAGATCTAGAG 154835 ||||| || || ||||| | | | ||| || | ||||| ||||| || Sbjct 192468 CGTGTTGTCACAGTGAAATGTGACATCAAGTCTGGCAATCTTGACATGGCTGATCTTAAG 192409 Query 154836 AAGAAAGCAATCATGAATACATTT--GAACTGTCATGTATTATGATTACATACCCATCTA 154893 ||||| | | |||| | ||||| | ||| ||||| ||||||||| || Sbjct 192408 GAGAAATG--TGAAAAATATAGCGAGGAACTTGGAGCTATCATGATCACATACCCAAGTA 192351 Query 154894 CACATGGTGTATTTGAAACTAACATTA-GACAGATATGTAAGATCGTTCATGACAATGGT 154952 || ||||||||||||| | | ||| | | | |||| | || |||||| | ||||| Sbjct 192350 CATTTGGTGTATTTGAACCGGAAGTTAAGGCTGC-ATGTGATATTGTTCATCAACATGGT 192292 Query 154953 GGTCAGGTATATCTTGATGGAGCAAATCTAAATGCACAGGTAGGACTAGCAAAACCATGT 155012 ||||| ||||| | || || || ||| | ||||| || | ||| | ||| || Sbjct 192291 GGTCAAGTATACATGGACGGTGCCAATATGAATGCTCAAATTGGATTGTGTTCACCTGGT 192232 Query 155013 GAGTATGGTGCAGATGTATGTCATCTAAACTTACATAAAACATTCTGTATTCCACATGGA 155072 ||| |||||| |||||||||||||| ||| | || || |||||||| ||||| ||||| Sbjct 192231 GAGATTGGTGCCGATGTATGTCATCTTAACCTTCACAAGACATTCTGCATTCCTCATGGT 192172 Query 155073 GGTGGAGGTCCTGGCGTAGGTCCTATAGGTGT 155104 ||||| || || || || ||||| || ||||| Sbjct 192171 GGTGGTGGACCAGGTGTTGGTCCAATTGGTGT 192140 Score = 127 bits (140), Expect = 2e-24 Identities = 184/260 (71%), Gaps = 0/260 (0%) Strand=Plus/Minus Query 153768 CAAAGGTTTGGTATTCCTATGGGATATGGAGGTCCTCATGCTGCATTCTTTGCAACAACA 153827 ||| | ||||| |||| | || ||||| ||||| |||||||| ||||| || Sbjct 193545 CAACGTTTTGGAGTTCCATTCGGTTATGGTGGTCCCCATGCTGCTTTCTTCGCTGTTGGC 193486 Query 153828 GACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAGGTCAGTCAGTAGATAGTGAAGGT 153887 || |||||||||||||| | || || | | | ||| || |||||| ||| Sbjct 193485 GATAAGTATAAGAGAAAAACCCCAGGACGTCTCATTGGTGTATCGAAAGATAGGCTAGGG 193426 Query 153888 AATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGGAGAGACAAAGCA 153947 |||||||| ||||| || |||| |||||||| |||||||| | ||||| || || Sbjct 193425 GATAAAGCAATGAGATTGGCTTTACAAACTAGAGAACAGCATATTCGCAGAGAAAAGGCT 193366 Query 153948 ACCAGTAACATCTGCACAGCTCAGGCACTGCTGGCTAATATGTCTGGATTCTATGCAGCA 154007 || ||||| | ||||| ||||| ||| || |||| || ||| || ||||||||||| Sbjct 193365 ACTAGTAATGTGTGCACTGCTCAAGCATTGTTGGCCAACATGAGTGCATTCTATGCAGTT 193306 Query 154008 TATCATGGTGCAGATGGACT 154027 || || || |||| ||||| Sbjct 193305 TACCACGGCCCAGAAGGACT 193286 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579208289380320