Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20glacialis_20[genbank_20GCA_5F002162575.1_202017-05-31] 623 sequences; 41,098,534 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq34 113 3e-20 seq18 96.9 2e-15 >seq34 Length=376069 Score = 113 bits (124), Expect = 3e-20 Identities = 157/216 (73%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 34770 AAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCA 34829 || |||||||||| ||| || || || ||||| ||||| |||||| | || |||| Sbjct 166320 AACACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCC 166379 Query 34830 TCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34889 || || || |||||||| || || | ||| || ||||| | || | ||||||||||| Sbjct 166380 TCGAGTTGCTTTCCGGCGAAGATCAATCGCTGTTGGTCGGGTGGAATTCCCTCCTTGTCT 166439 Query 34890 CTAATCTTCTGTTTGACGGATGCTATCGAT--TCACCG--GCCTCAACATCGACGGTTAT 34945 ||||| ||||| || | ||||| | ||| | |||||| |||| ||| || Sbjct 166440 TGGATCTTGGCCTTGAC--AT--TGTCGATGGTGTCCGAAGACTCAACCTCGAGGGTGAT 166495 Query 34946 GGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||||| |||||||| ||||| || ||||||||||| Sbjct 166496 AGTTTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 166531 >seq18 Length=877782 Score = 96.9 bits (106), Expect = 2e-15 Identities = 142/197 (72%), Gaps = 8/197 (4%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 |||||| || ||||| ||||| ||||| |||| |||| || || || || || ||||| Sbjct 575385 TTCTTTTTGGATGTTGTAGTCGGAAAGAGTTCGGCCATCCTCAAGTTGCTTACCAGCAAA 575444 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || ||||| ||||| | || | ||||| ||||| |||||| || || | Sbjct 575445 GATAAGACGTTGTTGGTCAGGTGGGATACCCTCTTTGTCTTGAATCTTAGCCTTCAC--A 575502 Query 34910 TGCTATCGAT--TCACCGGC--CTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCT 34965 | | ||||| | ||| | |||||| || | || || || ||||| |||||||||| Sbjct 575503 T--TGTCGATGGTATCCGACGACTCAACCTCTAAAGTGATTGTCTTTCCGGTGAGAGTCT 575560 Query 34966 TCACAAAGATCTGCATA 34982 | || |||||||||||| Sbjct 575561 TGACGAAGATCTGCATA 575577 Score = 95.1 bits (104), Expect = 8e-15 Identities = 131/183 (72%), Gaps = 8/183 (4%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||||||||| || ||| | || |||| || || || |||||||| || Sbjct 575614 TCCTTCTGGATGTTATAGTCTGAGAGGGTACGACCATCCTCAAGTTGCTTTCCGGCGAAA 575673 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | ||||| ||||| | || | ||||| ||||| |||||| |||||| Sbjct 575674 ATCAAACGTTGTTGGTCGGGTGGGATGCCCTCTTTGTCTTGAATCTTGGCTTTGAC---- 575729 Query 34911 GCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 | ||||||| ||| | ||||| |||| ||| ||||| ||||| ||||| ||||| Sbjct 575730 GTTATCGATAGTATCAGAAGATTCAACCTCGAGGGTGATGGTCTTTCCGGTGAGGGTCTT 575789 Query 34967 CAC 34969 || Sbjct 575790 AAC 575792 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324631135117944