Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20glacialis_20[genbank_20GCA_5F002162575.1_202017-05-31] 623 sequences; 41,098,534 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq3 168 8e-37 >seq3 Length=2126074 Score = 168 bits (186), Expect = 8e-37 Identities = 491/748 (66%), Gaps = 16/748 (2%) Strand=Plus/Plus Query 47991 TTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATG 48050 ||||| ||||| || ||||||||||| ||||| |||| ||||| | |||| |||| Sbjct 691554 TTGTTGCATGCATCTTTGTAAAGCATGAAAGGATTTCCGGTTTCGGTTTGAGCCTCAAGA 691613 Query 48051 ATAGATTTCCAAACAGTCCTAGCCTTTATAACAGCTCTAGCTTTATTATCATG----TTC 48106 ||||| | ||| | | |||||| ||| ||| || | || || ||| Sbjct 691614 ATAGAGTACCAGAGCTTTTGAGCCTTGATAG----TCTTGCGACCCTTTCCTGCCTTTTC 691669 Query 48107 GTA--TTTAGTATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACAT 48164 || | | ||| | | |||||| || || ||||| |||| | || ||||| ||| Sbjct 691670 ATAACTCTCGTAGAGGGC--CTCAAACTCCTCGCCATAAACATCTGCCAAACCAGGGCAT 691727 Query 48165 TCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCT 48224 ||||| || ||||| | | ||| || ||| |||| || | |||| || | ||| Sbjct 691728 TCATTGGGGCACATAAGAGTCCATTCTCCATTCTTTTCGACACGCTTCATGAACAAATCA 691787 Query 48225 GGTATCCAAAGAGCTATA-AATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCT 48283 || ||||| | || ||| || | ||| | | | | |||||| || || ||| | Sbjct 691788 GGAATCCACAAGGC-ATAGAAGAGATCGCGTGCGCGAACTTCTTCCTTACCGTGGTTCTT 691846 Query 48284 TTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTAC 48343 || |||||||| || | | ||| ||||||||||| || | || | || | | Sbjct 691847 GCGTAGATCAAGAAACTCGAAAACATCGGCATGCCATGGCTCAAGGTAAACAGCAAAAGC 691906 Query 48344 ACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAA 48403 ||| || ||||| ||||| || ||||| | |||||| ||||| ||||| |||||| | Sbjct 691907 ACCCGGGCGTTTGTTACCACCCTGATCAACATATCTTGCAGTGTTGTTGAAAACTCGAAG 691966 Query 48404 CATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCT 48463 ||| || ||||||||||| || | ||||| || || | || || ||| |||| | Sbjct 691967 CATGGGAACAATACCATTGGAATTTCCATTAGTACCGGCGATGTATGCACCAGTAGCACG 692026 Query 48464 TATATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTT 48523 || | ||| | ||| |||||||| || | || || || | ||||| || Sbjct 692027 GATTCTGTGAATGTTGAGACCAATACCACCGGCATTCTTTGAGATCATGGCACAAATCTT 692086 Query 48524 AAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGA 48583 | ||||| || || || || |||||||| ||| |||| | | || || || || Sbjct 692087 CAAAGTATCGTAGATACCATCAATACTATCCTCTTTCATGTCGATGAGGAAGCACGACGA 692146 Query 48584 CATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTT 48643 | ||| | || ||| || | | ||| | ||||| || ||||| |||| | || Sbjct 692147 AAGTTGTGCTTGTGGAGTACCCGCAGAAAAGAGCGTTGGGGAAGCATGTGTAAAGTACTT 692206 Query 48644 CTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATC-CCATTGATGTATACCTA 48702 | ||| | ||| || |||||||| ||| || || ||||| || | || ||||| | Sbjct 692207 GTTTGACATCAAGTTGTATGTTTCGATAGCACTTTCGATATCATCACCG-TGAATACCCA 692265 Query 48703 TAGATACACGCATTAACATATATTGAGG 48730 | |||||||| | ||| | |||||| Sbjct 692266 CGGCAACACGCATGATCATTTGTTGAGG 692293 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562104422577720