Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20glacialis_20[genbank_20GCA_5F002162575.1_202017-05-31] 623 sequences; 41,098,534 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq18 168 5e-36 seq6 104 2e-16 seq15 95.1 1e-13 >seq18 Length=877782 Score = 168 bits (186), Expect = 5e-36 Identities = 398/593 (67%), Gaps = 10/593 (2%) Strand=Plus/Minus Query 549994 TATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGT 550053 ||| ||||| ||||| || |||||||| ||||| ||| | | | ||| || | | Sbjct 666945 TATTGGTATTGATTTGGGTACCACATACTCCTGTGTGGGTATCTTCCGTGATGATAGAAT 666886 Query 550054 TGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGA 550113 |||||||| ||||| |||||||| || | || || || || | ||| | ||||| || Sbjct 666885 CGAAATTATCGCCAACGATCAAGGAAATCGTACCACACCTTCCTTCGTTGCCTTCACAGA 666826 Query 550114 AACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATAC 550173 || || | ||| | || ||||| || || | |||| | | || || | ||| || Sbjct 666825 TACCGAGCGTTTGATCGGAGATGCCGCCAAGAACCAAGTCGCCATGAACCCAATCAACAC 666766 Query 550174 TATTTTTGATGCTAAACGTTTAATTGGAAG-AAGTTTTAATGATTCGACTGTTCAGGCAG 550232 | || |||||||| ||||| ||||| | ||||| | ||| | ||||| || | Sbjct 666765 CGTCTTCGATGCTAAGCGTTTGATTGGTCGCAAGTTCGCA-GATGCTGAGGTTCAAGCCG 666707 Query 550233 ATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAGCT- 550291 |||||||||| | || ||| | | | | | | ||||| || ||| || | | Sbjct 666706 ATATGAAGCACTTCCCCTTCAAGGTCATCGACCGTGCCGGAAAGCCAGTTATCGAGGTTG 666647 Query 550292 ACTCATGAAGGATCTGT-TAAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTAAT 550350 | | | |||| | ||| ||||| |||||||| |||| || |||||| | || | Sbjct 666646 AGT--TCAAGGGCGAGACTAAGCAATTCACACCAGAAGAAATCTCTTCTATGATCTTGGT 666589 Query 550351 GAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAA--GTTACGGATGCAGTAATA 550408 || |||| | ||||| |||| |||| | ||| || | | || || | Sbjct 666588 CAAGATGAGGGAGACAGCTGAGGCTTACCTTGG--AGGAACCGTCAACAACGCCGTCGTC 666531 Query 550409 ACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATT 550468 || || ||||| || || | || ||||||||||||||||| || ||||| || | ||| Sbjct 666530 ACAGTCCCAGCTTACTTCACCGATTCACAACGTCAAGCTACCAAGGATGCCGGTCTCATT 666471 Query 550469 GCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGA 550528 ||||| || || ||||| ||||| ||||| |||||||| || ||||| |||| || || Sbjct 666470 GCTGGTCTCAACGTTCTCCGTATCATCAACGAACCTACCGCAGCTGCCATTGCTTACGGT 666411 Query 550529 CTTGATAAACATAATGATCAAGAACTTAATGTACTCATCTTTGATTGTGGAGG 550581 | || || | | ||| || | ||| || |||||||| ||| ||| || Sbjct 666410 TTGGACAAGAAGATTGAGGGTGAGCGTAACGTTCTCATCTTCGATCTTGGTGG 666358 Score = 111 bits (122), Expect = 1e-18 Identities = 335/512 (65%), Gaps = 13/512 (3%) Strand=Plus/Minus Query 552087 GATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACAAGA 552146 ||| | ||||| || ||||||| ||| || || || || || || ||||| ||||| | Sbjct 665736 GATGCCAAGATCGACAAATCCAGAGTCCACGAGATCGTCCTCGTCGGTGGTTCTACCCGT 665677 Query 552147 ATTCCTAAAATTCGCGAAATGTTAAGTTC---TTATTTCAATGGTAAAAAATTAAATGAA 552203 || || || | ||| | | | | ||| ||||| ||||| | ||| | Sbjct 665676 ATCCCACGTATCC---AAAAGCTCATCACCGATTACTTCAACGGTAAGGAGCCAAAC--A 665622 Query 552204 AGTG--TTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTT 552261 ||| | || || |||||||||||||| || ||||| || |||| || |||||||| | Sbjct 665621 AGTCCATCAACCCTGATGAGGCTGTTGCATACGGTGCTGCCGTTCAGGCTGCTATTCTCT 665562 Query 552262 CTGGACA-AACTGATGAAAAACTACAAA--ATATTGTACTTGTAGATGTTACTCCTCTAT 552318 |||| | | || | || | || || | || | ||| | ||||| | || | | Sbjct 665561 CTGGTGACACCTCCTCCAAGTCCACCAACGAGATCCTCCTTCTCGATGTCGCGCCATTGT 665502 Query 552319 CTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTA 552378 |||| ||| | || || | ||| || ||||| || || || ||||| || || | Sbjct 665501 CTCTCGGTATCGAGACTGCTGGTGGACAAATGACCAAGCTCATTCCAAGAAACACCACCA 665442 Query 552379 TTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAA 552438 | || || || || || || ||||| | || || || ||| ||| ||| | Sbjct 665441 TCCCAACCAAGAAGTCCGAGGTCTTCTCTACCTTCTCCGACAACCAACCTGGTGTCCTCA 665382 Query 552439 TTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTA 552498 ||||| | || || || ||| | || ||| || || || || | | |||| || Sbjct 665381 TTCAAGTCTTCGAGGGTGAACGTCAACGCACCAAGGACAACAACCTCTTGGGTAAATTCG 665322 Query 552499 ATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATA 552558 | | ||||| || ||||| || ||||| || || |||||||| ||||| |||||| Sbjct 665321 AGCTCACTGGTATCCCACCTGCACCACGTGGTGTTCCTCAAATTGAGGTTACCTTCGATC 665262 Query 552559 TCGATGCCAATGGAATTTTGAATGTGACTGCT 552590 | ||||| || ||||| |||| || ||||| Sbjct 665261 TTGATGCAAACGGAATCATGAACGTCTCTGCT 665230 >seq6 Length=1347266 Score = 104 bits (114), Expect = 2e-16 Identities = 116/154 (75%), Gaps = 1/154 (1%) Strand=Plus/Plus Query 550380 TTGGTCAAGAAGTTA-CGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAA 550438 |||| ||||||| | | | || || || ||||| ||||| || || || ||| ||| Sbjct 53108 TTGGGCAAGAAGGTCTCAAAGGCCGTCATCACTGTCCCAGCTTACTTCAACGACAACCAA 53167 Query 550439 CGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAAT 550498 ||||||||||| || |||||||| || || || ||||| ||||| ||||| ||||| Sbjct 53168 CGTCAAGCTACCAAGGATGCTGGTGCCATCGCCGGTCTTAACGTTCTCCGTATCATCAAC 53227 Query 550499 GAACCTACTGCTGCTGCACTTGCATATGGACTTG 550532 || ||||| |||||||| |||| || || |||| Sbjct 53228 GAGCCTACCGCTGCTGCCATTGCTTACGGTCTTG 53261 >seq15 Length=937851 Score = 95.1 bits (104), Expect = 1e-13 Identities = 149/209 (71%), Gaps = 6/209 (3%) Strand=Plus/Minus Query 399569 ATATGACAAGGAGGTAATGCCAtttttttAATGTCGACAGGATTCCATAAACTTATAATT 399628 ||||||||||| ||||| ||||| ||||| || | ||||||| ||||| ||| Sbjct 876572 ATATGACAAGGTGGTAACGCCATCAACTTAATATCTGCCACATTCCATGCACTTAGAATA 876513 Query 399629 ATTCTGCGATCATTTGGATTATTCATAATAGCATCAATACAATT--ATTTAATTGATCAA 399686 ||||| | ||| ||| |||||| || ||| || |||||||| | |||||||| Sbjct 876512 ATTCTCCTATCCCATGGGTTATTCTTA--AGCTTCCATACAATTTCCGCCAGTTGATCAA 876455 Query 399687 TTCCTTGATCATG-ATAATCTGTTTTACAATTATCATATTTGGCTCCGAAATGTCTCATT 399745 ||||| || || ||||||||||| || | ||||| || |||||||||| | | Sbjct 876454 CACCTTG-TCCTGTATAATCTGTTTCGGCATCAATGTATTTAGCGCCGAAATGTCGCCAT 876396 Query 399746 TGAAATCCATAACCGGGGCCAATATCTCC 399774 || || ||||| | || || | |||||| Sbjct 876395 TGGAAACCATACACAGGACCTAAATCTCC 876367 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029263052950270