Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20glacialis_20[genbank_20GCA_5F002162575.1_202017-05-31]
623 sequences; 41,098,534 total letters
Query= NC_016072.1
Length=1259197
Score E
Sequences producing significant alignments: (Bits) Value
seq18 168 5e-36
seq6 104 2e-16
seq15 95.1 1e-13
>seq18
Length=877782
Score = 168 bits (186), Expect = 5e-36
Identities = 398/593 (67%), Gaps = 10/593 (2%)
Strand=Plus/Minus
Query 549994 TATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGT 550053
||| ||||| ||||| || |||||||| ||||| ||| | | | ||| || | |
Sbjct 666945 TATTGGTATTGATTTGGGTACCACATACTCCTGTGTGGGTATCTTCCGTGATGATAGAAT 666886
Query 550054 TGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGA 550113
|||||||| ||||| |||||||| || | || || || || | ||| | ||||| ||
Sbjct 666885 CGAAATTATCGCCAACGATCAAGGAAATCGTACCACACCTTCCTTCGTTGCCTTCACAGA 666826
Query 550114 AACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATAC 550173
|| || | ||| | || ||||| || || | |||| | | || || | ||| ||
Sbjct 666825 TACCGAGCGTTTGATCGGAGATGCCGCCAAGAACCAAGTCGCCATGAACCCAATCAACAC 666766
Query 550174 TATTTTTGATGCTAAACGTTTAATTGGAAG-AAGTTTTAATGATTCGACTGTTCAGGCAG 550232
| || |||||||| ||||| ||||| | ||||| | ||| | ||||| || |
Sbjct 666765 CGTCTTCGATGCTAAGCGTTTGATTGGTCGCAAGTTCGCA-GATGCTGAGGTTCAAGCCG 666707
Query 550233 ATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAGCT- 550291
|||||||||| | || ||| | | | | | | ||||| || ||| || | |
Sbjct 666706 ATATGAAGCACTTCCCCTTCAAGGTCATCGACCGTGCCGGAAAGCCAGTTATCGAGGTTG 666647
Query 550292 ACTCATGAAGGATCTGT-TAAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTAAT 550350
| | | |||| | ||| ||||| |||||||| |||| || |||||| | || |
Sbjct 666646 AGT--TCAAGGGCGAGACTAAGCAATTCACACCAGAAGAAATCTCTTCTATGATCTTGGT 666589
Query 550351 GAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAA--GTTACGGATGCAGTAATA 550408
|| |||| | ||||| |||| |||| | ||| || | | || || |
Sbjct 666588 CAAGATGAGGGAGACAGCTGAGGCTTACCTTGG--AGGAACCGTCAACAACGCCGTCGTC 666531
Query 550409 ACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATT 550468
|| || ||||| || || | || ||||||||||||||||| || ||||| || | |||
Sbjct 666530 ACAGTCCCAGCTTACTTCACCGATTCACAACGTCAAGCTACCAAGGATGCCGGTCTCATT 666471
Query 550469 GCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGA 550528
||||| || || ||||| ||||| ||||| |||||||| || ||||| |||| || ||
Sbjct 666470 GCTGGTCTCAACGTTCTCCGTATCATCAACGAACCTACCGCAGCTGCCATTGCTTACGGT 666411
Query 550529 CTTGATAAACATAATGATCAAGAACTTAATGTACTCATCTTTGATTGTGGAGG 550581
| || || | | ||| || | ||| || |||||||| ||| ||| ||
Sbjct 666410 TTGGACAAGAAGATTGAGGGTGAGCGTAACGTTCTCATCTTCGATCTTGGTGG 666358
Score = 111 bits (122), Expect = 1e-18
Identities = 335/512 (65%), Gaps = 13/512 (3%)
Strand=Plus/Minus
Query 552087 GATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACAAGA 552146
||| | ||||| || ||||||| ||| || || || || || || ||||| ||||| |
Sbjct 665736 GATGCCAAGATCGACAAATCCAGAGTCCACGAGATCGTCCTCGTCGGTGGTTCTACCCGT 665677
Query 552147 ATTCCTAAAATTCGCGAAATGTTAAGTTC---TTATTTCAATGGTAAAAAATTAAATGAA 552203
|| || || | ||| | | | | ||| ||||| ||||| | ||| |
Sbjct 665676 ATCCCACGTATCC---AAAAGCTCATCACCGATTACTTCAACGGTAAGGAGCCAAAC--A 665622
Query 552204 AGTG--TTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTT 552261
||| | || || |||||||||||||| || ||||| || |||| || |||||||| |
Sbjct 665621 AGTCCATCAACCCTGATGAGGCTGTTGCATACGGTGCTGCCGTTCAGGCTGCTATTCTCT 665562
Query 552262 CTGGACA-AACTGATGAAAAACTACAAA--ATATTGTACTTGTAGATGTTACTCCTCTAT 552318
|||| | | || | || | || || | || | ||| | ||||| | || | |
Sbjct 665561 CTGGTGACACCTCCTCCAAGTCCACCAACGAGATCCTCCTTCTCGATGTCGCGCCATTGT 665502
Query 552319 CTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTA 552378
|||| ||| | || || | ||| || ||||| || || || ||||| || || |
Sbjct 665501 CTCTCGGTATCGAGACTGCTGGTGGACAAATGACCAAGCTCATTCCAAGAAACACCACCA 665442
Query 552379 TTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAA 552438
| || || || || || || ||||| | || || || ||| ||| ||| |
Sbjct 665441 TCCCAACCAAGAAGTCCGAGGTCTTCTCTACCTTCTCCGACAACCAACCTGGTGTCCTCA 665382
Query 552439 TTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTA 552498
||||| | || || || ||| | || ||| || || || || | | |||| ||
Sbjct 665381 TTCAAGTCTTCGAGGGTGAACGTCAACGCACCAAGGACAACAACCTCTTGGGTAAATTCG 665322
Query 552499 ATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATA 552558
| | ||||| || ||||| || ||||| || || |||||||| ||||| ||||||
Sbjct 665321 AGCTCACTGGTATCCCACCTGCACCACGTGGTGTTCCTCAAATTGAGGTTACCTTCGATC 665262
Query 552559 TCGATGCCAATGGAATTTTGAATGTGACTGCT 552590
| ||||| || ||||| |||| || |||||
Sbjct 665261 TTGATGCAAACGGAATCATGAACGTCTCTGCT 665230
>seq6
Length=1347266
Score = 104 bits (114), Expect = 2e-16
Identities = 116/154 (75%), Gaps = 1/154 (1%)
Strand=Plus/Plus
Query 550380 TTGGTCAAGAAGTTA-CGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAA 550438
|||| ||||||| | | | || || || ||||| ||||| || || || ||| |||
Sbjct 53108 TTGGGCAAGAAGGTCTCAAAGGCCGTCATCACTGTCCCAGCTTACTTCAACGACAACCAA 53167
Query 550439 CGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAAT 550498
||||||||||| || |||||||| || || || ||||| ||||| ||||| |||||
Sbjct 53168 CGTCAAGCTACCAAGGATGCTGGTGCCATCGCCGGTCTTAACGTTCTCCGTATCATCAAC 53227
Query 550499 GAACCTACTGCTGCTGCACTTGCATATGGACTTG 550532
|| ||||| |||||||| |||| || || ||||
Sbjct 53228 GAGCCTACCGCTGCTGCCATTGCTTACGGTCTTG 53261
>seq15
Length=937851
Score = 95.1 bits (104), Expect = 1e-13
Identities = 149/209 (71%), Gaps = 6/209 (3%)
Strand=Plus/Minus
Query 399569 ATATGACAAGGAGGTAATGCCAtttttttAATGTCGACAGGATTCCATAAACTTATAATT 399628
||||||||||| ||||| ||||| ||||| || | ||||||| ||||| |||
Sbjct 876572 ATATGACAAGGTGGTAACGCCATCAACTTAATATCTGCCACATTCCATGCACTTAGAATA 876513
Query 399629 ATTCTGCGATCATTTGGATTATTCATAATAGCATCAATACAATT--ATTTAATTGATCAA 399686
||||| | ||| ||| |||||| || ||| || |||||||| | ||||||||
Sbjct 876512 ATTCTCCTATCCCATGGGTTATTCTTA--AGCTTCCATACAATTTCCGCCAGTTGATCAA 876455
Query 399687 TTCCTTGATCATG-ATAATCTGTTTTACAATTATCATATTTGGCTCCGAAATGTCTCATT 399745
||||| || || ||||||||||| || | ||||| || |||||||||| | |
Sbjct 876454 CACCTTG-TCCTGTATAATCTGTTTCGGCATCAATGTATTTAGCGCCGAAATGTCGCCAT 876396
Query 399746 TGAAATCCATAACCGGGGCCAATATCTCC 399774
|| || ||||| | || || | ||||||
Sbjct 876395 TGGAAACCATACACAGGACCTAAATCTCC 876367
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 4029263052950270
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |