Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20glacialis_20[genbank_20GCA_5F002162575.1_202017-05-31] 623 sequences; 41,098,534 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq9 122 2e-22 seq3 104 4e-17 >seq9 Length=1212739 Score = 122 bits (134), Expect = 2e-22 Identities = 305/467 (65%), Gaps = 9/467 (2%) Strand=Plus/Plus Query 25859 AGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCA 25918 ||||| |||| |||| | || || || || || || ||||| || || ||||| ||| Sbjct 165298 AGAGCTCTACCTTTGCTCAACGTCTCGTTGCATTCGCCGCTGTTGAAGGTATCTTCTTCT 165357 Query 25919 GCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACT 25978 || || ||||| | |||||||||||||| || || |||| | || || || Sbjct 165358 CTGGATCTTTTGCATCAATCTTCTGGCTCAAAAAGCGTGGTCTCATGGCTGGACTCACCT 165417 Query 25979 TTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCT 26038 | |||||||| |||||| | | || || |||||||||| ||||| || ||||| || | Sbjct 165418 TCTCCAACGAACTCATCTCCCGTGATGAAGGTCTCCACACCGATTTCGCATGCCTCCTAT 165477 Query 26039 ACACGGGCCACTTGCTCCACAAACCTTCTCAAGAGACCGTCTACAGTATCATCAAAGAGG 26098 | | | | || || | || || || | ||||| | | |||| | || | Sbjct 165478 TCTCTCATCTCAAGCACCGC---CCATCCAAACAAGCCGTCCAAGATGTCATTACCGAAG 165534 Query 26099 CTGTGGAGATCGAGAAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGA 26158 | || || ||||| | || || | ||||||| Sbjct 165535 CCGTTGAAATCGAACAAGAATTCTTGACCGAGGCTCTTCCTTGCTCTCTTTTAGGCATGA 165594 Query 26159 ACAACAGACTCATGAGCCAATACATTGAGTATGTGGCCGACCATCTGCTG--TGCCAGCT 26216 || | ||||||| ||||||||||||| || || || | ||||||| ||| | Sbjct 165595 ACTCTACTCTCATGAAGCAATACATTGAGTTCGTCGCTGATCGTCTGCTGGTTGCTT--T 165652 Query 26217 GGGACTCGCCAGACTCTACA-GTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGT 26275 ||| || || | |||||| || ||| ||||| |||||||| ||||| ||||| || | Sbjct 165653 GGGTAACGACAAAGTCTACAAGTCTGCC-AACCCATTCGACTTCATGGAGAACATCTCCT 165711 Query 26276 TGGAAGGGAAGACCAACTTCTTTGAAAAGAGGGTCGGCGACTATCAA 26322 ||| || |||||||||||||| || ||||| || || || || ||| Sbjct 165712 TGGCTGGCAAGACCAACTTCTTCGAGAAGAGAGTTGGAGATTACCAA 165758 >seq3 Length=2126074 Score = 104 bits (114), Expect = 4e-17 Identities = 347/534 (65%), Gaps = 12/534 (2%) Strand=Plus/Plus Query 221998 GGGACACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGAT 222057 ||| ||||| ||| |||| | || | || ||| | || |||||| | || || || Sbjct 691733 GGGGCACATAAGAGTCCATTCTCCATTCTTTTCGACACGCTTCATGAACAAATCAGGAAT 691792 Query 222058 CCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAG 222117 ||||| || | |||||||| | | || || ||| |||| ||| || | || Sbjct 691793 CCACAAGGCATAGAAGAGATCGCGTGCGCGAACTTCTTCCTTACCGTGGTTCTTGCGTAG 691852 Query 222118 ATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGG 222177 ||| | |||||| |||| || || ||||| ||||| || || || || | ||| || || Sbjct 691853 ATCAAGAAACTCGAAAACATCGGCATGCCATGGCTCAAGGTAAACAGCAAAAGCACCCGG 691912 Query 222178 TCGCTTGTTGCCACCCTGATCCACCATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCG 222236 || ||||| |||||||||| || ||| | ||| | |||||| | ||||| | | Sbjct 691913 GCGTTTGTTACCACCCTGAT-CAACATATCTTGCAGTGTTGTTGAAAACTCGAAGCATGG 691971 Query 222237 GTACCAGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGT 222296 | || | || ||||| || || || || ||||| ||||| || | || Sbjct 691972 GAACAATACCATTGGAATTTCCATTAGTACCGGCGATGTATGCACCAGTAGCAC---GGA 692028 Query 222297 TACTGGCAGACATG---CCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGA 222353 | ||| | || || ||||||||||| | || ||||||||||| || |||| | Sbjct 692029 TTCTGTGAATGTTGAGACCAATACCACCGGCATTCTTTGAGATCATGGCACAAATCTTCA 692088 Query 222354 GAGTGTCCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACA 222413 ||| || ||| || || ||| ||||| || | || | || || || ||||| | Sbjct 692089 AAGTATCGTAGATACCATCAATACTATCCTCTTTCATGTCGATGAGGAAGCACGACGAAA 692148 Query 222414 TCTGAGATTTGGTGGA--ACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCC 222471 || | || ||||| || || ||| ||||| || || ||||||||||| Sbjct 692149 GTTGTGCTT--GTGGAGTACCCGCAGAAAAGAGCGTTGGGGAAGCATGTGTAAAGTACTT 692206 Query 222472 CCTAGACATCAGATCGTACGTCTCTACGACTCTGGCGATGTTGTCCCCGTGAAT 222525 | ||||||| | ||| || || | | || |||| | || |||||||| Sbjct 692207 GTTTGACATCAAGTTGTATGTTTCGATAGCACTTTCGATATCATCACCGTGAAT 692260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928837566621120