Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20glacialis_20[genbank_20GCA_5F002162575.1_202017-05-31]
623 sequences; 41,098,534 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq9 122 2e-22
seq3 104 4e-17
>seq9
Length=1212739
Score = 122 bits (134), Expect = 2e-22
Identities = 305/467 (65%), Gaps = 9/467 (2%)
Strand=Plus/Plus
Query 25859 AGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCA 25918
||||| |||| |||| | || || || || || || ||||| || || ||||| |||
Sbjct 165298 AGAGCTCTACCTTTGCTCAACGTCTCGTTGCATTCGCCGCTGTTGAAGGTATCTTCTTCT 165357
Query 25919 GCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACT 25978
|| || ||||| | |||||||||||||| || || |||| | || || ||
Sbjct 165358 CTGGATCTTTTGCATCAATCTTCTGGCTCAAAAAGCGTGGTCTCATGGCTGGACTCACCT 165417
Query 25979 TTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCT 26038
| |||||||| |||||| | | || || |||||||||| ||||| || ||||| || |
Sbjct 165418 TCTCCAACGAACTCATCTCCCGTGATGAAGGTCTCCACACCGATTTCGCATGCCTCCTAT 165477
Query 26039 ACACGGGCCACTTGCTCCACAAACCTTCTCAAGAGACCGTCTACAGTATCATCAAAGAGG 26098
| | | | || || | || || || | ||||| | | |||| | || |
Sbjct 165478 TCTCTCATCTCAAGCACCGC---CCATCCAAACAAGCCGTCCAAGATGTCATTACCGAAG 165534
Query 26099 CTGTGGAGATCGAGAAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGA 26158
| || || ||||| | || || | |||||||
Sbjct 165535 CCGTTGAAATCGAACAAGAATTCTTGACCGAGGCTCTTCCTTGCTCTCTTTTAGGCATGA 165594
Query 26159 ACAACAGACTCATGAGCCAATACATTGAGTATGTGGCCGACCATCTGCTG--TGCCAGCT 26216
|| | ||||||| ||||||||||||| || || || | ||||||| ||| |
Sbjct 165595 ACTCTACTCTCATGAAGCAATACATTGAGTTCGTCGCTGATCGTCTGCTGGTTGCTT--T 165652
Query 26217 GGGACTCGCCAGACTCTACA-GTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGT 26275
||| || || | |||||| || ||| ||||| |||||||| ||||| ||||| || |
Sbjct 165653 GGGTAACGACAAAGTCTACAAGTCTGCC-AACCCATTCGACTTCATGGAGAACATCTCCT 165711
Query 26276 TGGAAGGGAAGACCAACTTCTTTGAAAAGAGGGTCGGCGACTATCAA 26322
||| || |||||||||||||| || ||||| || || || || |||
Sbjct 165712 TGGCTGGCAAGACCAACTTCTTCGAGAAGAGAGTTGGAGATTACCAA 165758
>seq3
Length=2126074
Score = 104 bits (114), Expect = 4e-17
Identities = 347/534 (65%), Gaps = 12/534 (2%)
Strand=Plus/Plus
Query 221998 GGGACACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGAT 222057
||| ||||| ||| |||| | || | || ||| | || |||||| | || || ||
Sbjct 691733 GGGGCACATAAGAGTCCATTCTCCATTCTTTTCGACACGCTTCATGAACAAATCAGGAAT 691792
Query 222058 CCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAG 222117
||||| || | |||||||| | | || || ||| |||| ||| || | ||
Sbjct 691793 CCACAAGGCATAGAAGAGATCGCGTGCGCGAACTTCTTCCTTACCGTGGTTCTTGCGTAG 691852
Query 222118 ATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGG 222177
||| | |||||| |||| || || ||||| ||||| || || || || | ||| || ||
Sbjct 691853 ATCAAGAAACTCGAAAACATCGGCATGCCATGGCTCAAGGTAAACAGCAAAAGCACCCGG 691912
Query 222178 TCGCTTGTTGCCACCCTGATCCACCATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCG 222236
|| ||||| |||||||||| || ||| | ||| | |||||| | ||||| | |
Sbjct 691913 GCGTTTGTTACCACCCTGAT-CAACATATCTTGCAGTGTTGTTGAAAACTCGAAGCATGG 691971
Query 222237 GTACCAGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGT 222296
| || | || ||||| || || || || ||||| ||||| || | ||
Sbjct 691972 GAACAATACCATTGGAATTTCCATTAGTACCGGCGATGTATGCACCAGTAGCAC---GGA 692028
Query 222297 TACTGGCAGACATG---CCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGA 222353
| ||| | || || ||||||||||| | || ||||||||||| || |||| |
Sbjct 692029 TTCTGTGAATGTTGAGACCAATACCACCGGCATTCTTTGAGATCATGGCACAAATCTTCA 692088
Query 222354 GAGTGTCCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACA 222413
||| || ||| || || ||| ||||| || | || | || || || ||||| |
Sbjct 692089 AAGTATCGTAGATACCATCAATACTATCCTCTTTCATGTCGATGAGGAAGCACGACGAAA 692148
Query 222414 TCTGAGATTTGGTGGA--ACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCC 222471
|| | || ||||| || || ||| ||||| || || |||||||||||
Sbjct 692149 GTTGTGCTT--GTGGAGTACCCGCAGAAAAGAGCGTTGGGGAAGCATGTGTAAAGTACTT 692206
Query 222472 CCTAGACATCAGATCGTACGTCTCTACGACTCTGGCGATGTTGTCCCCGTGAAT 222525
| ||||||| | ||| || || | | || |||| | || ||||||||
Sbjct 692207 GTTTGACATCAAGTTGTATGTTTCGATAGCACTTTCGATATCATCACCGTGAAT 692260
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 928837566621120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |