Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20glacialis_20[genbank_20GCA_5F002162575.1_202017-05-31] 623 sequences; 41,098,534 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq18 165 5e-35 seq5 96.9 2e-14 seq42 87.8 1e-11 seq34 86.0 4e-11 >seq18 Length=877782 Score = 165 bits (182), Expect = 5e-35 Identities = 368/548 (67%), Gaps = 6/548 (1%) Strand=Plus/Minus Query 474332 ATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTA 474391 |||||||||||||| || || || ||| ||||| | | | | | ||| || | | Sbjct 666944 ATTGGTATTGATTTGGGTACCACATACTCCTGTGTGGGTATCTTCCGTGATGATAGAATC 666885 Query 474392 GAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAA 474451 ||||| || ||||| || ||||| ||| | || ||||| || | ||| | || || || Sbjct 666884 GAAATTATCGCCAACGATCAAGGAAATCGTACCACACCTTCCTTCGTTGCCTTCACAGAT 666825 Query 474452 ACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACT 474511 || || | | | || |||||||| || || | |||| || || || | || || Sbjct 666824 ACCGAGCGTTTGATCGGAGATGCCGCCAAGAACCAAGTCGCCATGAACCCAATCAACACC 666765 Query 474512 ATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGAT 474571 | || |||||||| | ||||||||||| || || | ||| | || ||| | ||| Sbjct 666764 GTCTTCGATGCTAAGCGTTTGATTGGTCGCAAGTTCGCAGATGCTGAGGTTCAAGCCGAT 666705 Query 474572 ATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAGC--AA 474629 ||| || | || || ||||| || | || || || ||| ||| || | | Sbjct 666704 ATGAAGCACTTCCCCTTCAAGGTCATCGACCGTGCCGGAAAGCCAGTTATCGAGGTTGAG 666645 Query 474630 TACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCA 474689 | || | || || ||||| ||||| |||| ||| |||| ||||| ||| | || | || Sbjct 666644 TTCAAG--GGCGAGACTAAGCAATTCACACCAGAAGAAATCTCTTCTATGATCTTGGTCA 666587 Query 474690 AAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATTACT 474748 | |||| | || || ||| | || |||||| | || | | || || | || Sbjct 666586 AGATGAGGGAGACAGCTGAGG-CTTACCTTGGAGGAACCGTCAACAACGCCGTCGTCACA 666528 Query 474749 GTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCA 474808 || ||||| || || | ||||| ||||||||||| || || ||||| || ||||| Sbjct 666527 GTCCCAGCTTACTTCACCGATTCACAACGTCAAGCTACCAAGGATGCCGGTCTCATTGCT 666468 Query 474809 GGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTT 474868 ||||| || ||| | ||||| || || ||||| || ||||| || ||||||| ||| | Sbjct 666467 GGTCTCAACGTTCTCCGTATCATCAACGAACCTACCGCAGCTGCCATTGCTTACGGTTTG 666408 Query 474869 GATAAGAA 474876 || ||||| Sbjct 666407 GACAAGAA 666400 Score = 111 bits (122), Expect = 1e-18 Identities = 158/220 (72%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||||||||| || || | ||| | || |||||| | || || || | ||||| Sbjct 575355 ACGAAGACGAAGGACCAAATGTAAAGTTGATTCTTTTTGGATGTTGTAGTCGGAAAGAGT 575414 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 || | ||| ||||||||||| |||||||| |||||||||||||| ||||| || || || Sbjct 575415 TCGGCCATCCTCAAGTTGCTTACCAGCAAAGATAAGACGTTGTTGGTCAGGTGGGATACC 575474 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729 || |||||||||||||| || ||| || || ||||| | | | || || | Sbjct 575475 CTCTTTGTCTTGAATCTTAGCCTTCACATTGTCGATGGTATCCGACGACTCAA-CCTCTA 575533 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || |||||||||||||| ||||| || || Sbjct 575534 AAGTGATTGTCTTTCCGGTGAGAGTCTTGACGAAGATCTG 575573 Score = 107 bits (118), Expect = 1e-17 Identities = 121/162 (75%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 |||||| ||||| || ||||||||||| || || || || || || | || || Sbjct 575867 ACGAAGGCGGAGGACGAGATGAAGTGTGGACTCCTTCTGAATGTTGTAGTCTGAGAGGGT 575926 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | ||||||||||||||| || || ||||| | ||| |||||||| |||||||| || Sbjct 575927 GCGACCATCTTCAAGTTGCTTGCCTGCGAAAATCAAACGCTGTTGATCGGGAGGAATCCC 575986 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATC 480712 ||||||||||| ||||| ||||||| |||||||| || Sbjct 575987 CTCCTTGTCTTGGATCTTGGCTTTGACATTGTCAATAGTGTC 576028 Score = 105 bits (116), Expect = 4e-17 Identities = 111/146 (76%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 ||| |||||||||||||| || ||||| | ||||||||| || || || || || || || Sbjct 575649 ATCCTCAAGTTGCTTTCCGGCGAAAATCAAACGTTGTTGGTCGGGTGGGATGCCCTCTTT 575708 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAAT 480736 |||||||||||| |||||| || |||||||||| | | || ||||| || Sbjct 575709 GTCTTGAATCTTGGCTTTGACGTTATCGATAGTATCAGAAGATTCAACCTCGAGGGTGAT 575768 Query 480737 AGTTTTACCGGTGAGAGTCTTAACGA 480762 || || |||||||| |||||||||| Sbjct 575769 GGTCTTTCCGGTGAGGGTCTTAACGA 575794 Score = 95.1 bits (104), Expect = 8e-14 Identities = 118/162 (73%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 |||||||||||| || | || | || ||||| || || || ||||| ||||| Sbjct 575127 ACGAAGACGGAGCACCAAGTGCAAGGTGCTTTCCTTTTGAATGTTGTAATCCAAAAGAGT 575186 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 |||| || || | ||||||||||| || || | || ||||||||||| ||||| || Sbjct 575187 TCTGCCGTCCTCCAACTGCTTTCCAGCGAAGATCAATCGCTGTTGATCAGGTGGAATGCC 575246 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATC 480712 ||||| || |||||||| |||||| ||||||||||| Sbjct 575247 CTCCTTATCCTGAATCTTAGCCTTGACATTATCAATAGTATC 575288 >seq5 Length=1928780 Score = 96.9 bits (106), Expect = 2e-14 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677 || ||||||||||||||||| || || | |||||||||||| || |||||||| |||||| Sbjct 1275158 TCCTCAAGTTGCTTTCCAGCGAAGATCAAACGTTGTTGATCGGGGGGAATTCCCTCCTTG 1275217 Query 480678 TCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATA 480737 ||||| ||||| || ||| || ||||| |||| | |||||||| || Sbjct 1275218 TCTTGGATCTTAGCCTTAACATTGTCGATAGTGTCAGAGGACTCGACCTCAAGGGTGATG 1275277 Query 480738 GTTTTACCGGTGAGAGTCTTAACGAA 480763 || || || || || ||||| ||||| Sbjct 1275278 GTCTTGCCCGTAAGGGTCTTGACGAA 1275303 >seq42 Length=269864 Score = 87.8 bits (96), Expect = 1e-11 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 474744 TTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAA 474803 |||| ||||| || || || || ||||| ||||||||||| || || ||||| || || Sbjct 164045 TTACCGTTCCCGCCTACTTCAACGATTCCCAACGTCAAGCCACCAAGGATGCTGGTCAAA 163986 Query 474804 TTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATG 474863 |||| ||| | || ||| | | | |||| || |||||||| ||||| || ||||||| Sbjct 163985 TTGCCGGTTTGAACGTTCTCAGAGTCGTTAACGAGCCAACAGCTGCCGCTCTCGCTTATG 163926 Query 474864 GTCTTGATAAG 474874 || | || ||| Sbjct 163925 GTTTGGAGAAG 163915 >seq34 Length=376069 Score = 86.0 bits (94), Expect = 4e-11 Identities = 113/154 (73%), Gaps = 2/154 (1%) Strand=Plus/Plus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 ||| || ||||||||||| || || || | || ||||| || || |||||||| ||||| Sbjct 166376 ATCCTCGAGTTGCTTTCCGGCGAAGATCAATCGCTGTTGGTCGGGTGGAATTCCCTCCTT 166435 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAA 480735 |||||| ||||| |||||| || || || || | | | || || ||||| | Sbjct 166436 GTCTTGGATCTTGGCCTTGACATTGTCGATGGTGTCCGAAGACTCAA-CCTCGAGGGTGA 166494 Query 480736 TAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||||||| || ||||| ||||| ||||| || || Sbjct 166495 TAGTTTTGCCCGTGAGGGTCTTGACGAAGATCTG 166528 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268152476507204