Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20glacialis_20[genbank_20GCA_5F002162575.1_202017-05-31]
623 sequences; 41,098,534 total letters
Query= NC_020104.1
Length=1021348
Score E
Sequences producing significant alignments: (Bits) Value
seq18 165 5e-35
seq5 96.9 2e-14
seq42 87.8 1e-11
seq34 86.0 4e-11
>seq18
Length=877782
Score = 165 bits (182), Expect = 5e-35
Identities = 368/548 (67%), Gaps = 6/548 (1%)
Strand=Plus/Minus
Query 474332 ATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTA 474391
|||||||||||||| || || || ||| ||||| | | | | | ||| || | |
Sbjct 666944 ATTGGTATTGATTTGGGTACCACATACTCCTGTGTGGGTATCTTCCGTGATGATAGAATC 666885
Query 474392 GAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAA 474451
||||| || ||||| || ||||| ||| | || ||||| || | ||| | || || ||
Sbjct 666884 GAAATTATCGCCAACGATCAAGGAAATCGTACCACACCTTCCTTCGTTGCCTTCACAGAT 666825
Query 474452 ACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACT 474511
|| || | | | || |||||||| || || | |||| || || || | || ||
Sbjct 666824 ACCGAGCGTTTGATCGGAGATGCCGCCAAGAACCAAGTCGCCATGAACCCAATCAACACC 666765
Query 474512 ATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGAT 474571
| || |||||||| | ||||||||||| || || | ||| | || ||| | |||
Sbjct 666764 GTCTTCGATGCTAAGCGTTTGATTGGTCGCAAGTTCGCAGATGCTGAGGTTCAAGCCGAT 666705
Query 474572 ATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAGC--AA 474629
||| || | || || ||||| || | || || || ||| ||| || | |
Sbjct 666704 ATGAAGCACTTCCCCTTCAAGGTCATCGACCGTGCCGGAAAGCCAGTTATCGAGGTTGAG 666645
Query 474630 TACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCA 474689
| || | || || ||||| ||||| |||| ||| |||| ||||| ||| | || | ||
Sbjct 666644 TTCAAG--GGCGAGACTAAGCAATTCACACCAGAAGAAATCTCTTCTATGATCTTGGTCA 666587
Query 474690 AAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATTACT 474748
| |||| | || || ||| | || |||||| | || | | || || | ||
Sbjct 666586 AGATGAGGGAGACAGCTGAGG-CTTACCTTGGAGGAACCGTCAACAACGCCGTCGTCACA 666528
Query 474749 GTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCA 474808
|| ||||| || || | ||||| ||||||||||| || || ||||| || |||||
Sbjct 666527 GTCCCAGCTTACTTCACCGATTCACAACGTCAAGCTACCAAGGATGCCGGTCTCATTGCT 666468
Query 474809 GGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTT 474868
||||| || ||| | ||||| || || ||||| || ||||| || ||||||| ||| |
Sbjct 666467 GGTCTCAACGTTCTCCGTATCATCAACGAACCTACCGCAGCTGCCATTGCTTACGGTTTG 666408
Query 474869 GATAAGAA 474876
|| |||||
Sbjct 666407 GACAAGAA 666400
Score = 111 bits (122), Expect = 1e-18
Identities = 158/220 (72%), Gaps = 2/220 (1%)
Strand=Plus/Plus
Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610
||||||||| || || | ||| | || |||||| | || || || | |||||
Sbjct 575355 ACGAAGACGAAGGACCAAATGTAAAGTTGATTCTTTTTGGATGTTGTAGTCGGAAAGAGT 575414
Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670
|| | ||| ||||||||||| |||||||| |||||||||||||| ||||| || || ||
Sbjct 575415 TCGGCCATCCTCAAGTTGCTTACCAGCAAAGATAAGACGTTGTTGGTCAGGTGGGATACC 575474
Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729
|| |||||||||||||| || ||| || || ||||| | | | || || |
Sbjct 575475 CTCTTTGTCTTGAATCTTAGCCTTCACATTGTCGATGGTATCCGACGACTCAA-CCTCTA 575533
Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
|| || || || |||||||||||||| ||||| || ||
Sbjct 575534 AAGTGATTGTCTTTCCGGTGAGAGTCTTGACGAAGATCTG 575573
Score = 107 bits (118), Expect = 1e-17
Identities = 121/162 (75%), Gaps = 0/162 (0%)
Strand=Plus/Plus
Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610
|||||| ||||| || ||||||||||| || || || || || || | || ||
Sbjct 575867 ACGAAGGCGGAGGACGAGATGAAGTGTGGACTCCTTCTGAATGTTGTAGTCTGAGAGGGT 575926
Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670
| ||||||||||||||| || || ||||| | ||| |||||||| |||||||| ||
Sbjct 575927 GCGACCATCTTCAAGTTGCTTGCCTGCGAAAATCAAACGCTGTTGATCGGGAGGAATCCC 575986
Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATC 480712
||||||||||| ||||| ||||||| |||||||| ||
Sbjct 575987 CTCCTTGTCTTGGATCTTGGCTTTGACATTGTCAATAGTGTC 576028
Score = 105 bits (116), Expect = 4e-17
Identities = 111/146 (76%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676
||| |||||||||||||| || ||||| | ||||||||| || || || || || || ||
Sbjct 575649 ATCCTCAAGTTGCTTTCCGGCGAAAATCAAACGTTGTTGGTCGGGTGGGATGCCCTCTTT 575708
Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAAT 480736
|||||||||||| |||||| || |||||||||| | | || ||||| ||
Sbjct 575709 GTCTTGAATCTTGGCTTTGACGTTATCGATAGTATCAGAAGATTCAACCTCGAGGGTGAT 575768
Query 480737 AGTTTTACCGGTGAGAGTCTTAACGA 480762
|| || |||||||| ||||||||||
Sbjct 575769 GGTCTTTCCGGTGAGGGTCTTAACGA 575794
Score = 95.1 bits (104), Expect = 8e-14
Identities = 118/162 (73%), Gaps = 0/162 (0%)
Strand=Plus/Plus
Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610
|||||||||||| || | || | || ||||| || || || ||||| |||||
Sbjct 575127 ACGAAGACGGAGCACCAAGTGCAAGGTGCTTTCCTTTTGAATGTTGTAATCCAAAAGAGT 575186
Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670
|||| || || | ||||||||||| || || | || ||||||||||| ||||| ||
Sbjct 575187 TCTGCCGTCCTCCAACTGCTTTCCAGCGAAGATCAATCGCTGTTGATCAGGTGGAATGCC 575246
Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATC 480712
||||| || |||||||| |||||| |||||||||||
Sbjct 575247 CTCCTTATCCTGAATCTTAGCCTTGACATTATCAATAGTATC 575288
>seq5
Length=1928780
Score = 96.9 bits (106), Expect = 2e-14
Identities = 109/146 (75%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677
|| ||||||||||||||||| || || | |||||||||||| || |||||||| ||||||
Sbjct 1275158 TCCTCAAGTTGCTTTCCAGCGAAGATCAAACGTTGTTGATCGGGGGGAATTCCCTCCTTG 1275217
Query 480678 TCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATA 480737
||||| ||||| || ||| || ||||| |||| | |||||||| ||
Sbjct 1275218 TCTTGGATCTTAGCCTTAACATTGTCGATAGTGTCAGAGGACTCGACCTCAAGGGTGATG 1275277
Query 480738 GTTTTACCGGTGAGAGTCTTAACGAA 480763
|| || || || || ||||| |||||
Sbjct 1275278 GTCTTGCCCGTAAGGGTCTTGACGAA 1275303
>seq42
Length=269864
Score = 87.8 bits (96), Expect = 1e-11
Identities = 98/131 (75%), Gaps = 0/131 (0%)
Strand=Plus/Minus
Query 474744 TTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAA 474803
|||| ||||| || || || || ||||| ||||||||||| || || ||||| || ||
Sbjct 164045 TTACCGTTCCCGCCTACTTCAACGATTCCCAACGTCAAGCCACCAAGGATGCTGGTCAAA 163986
Query 474804 TTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATG 474863
|||| ||| | || ||| | | | |||| || |||||||| ||||| || |||||||
Sbjct 163985 TTGCCGGTTTGAACGTTCTCAGAGTCGTTAACGAGCCAACAGCTGCCGCTCTCGCTTATG 163926
Query 474864 GTCTTGATAAG 474874
|| | || |||
Sbjct 163925 GTTTGGAGAAG 163915
>seq34
Length=376069
Score = 86.0 bits (94), Expect = 4e-11
Identities = 113/154 (73%), Gaps = 2/154 (1%)
Strand=Plus/Plus
Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676
||| || ||||||||||| || || || | || ||||| || || |||||||| |||||
Sbjct 166376 ATCCTCGAGTTGCTTTCCGGCGAAGATCAATCGCTGTTGGTCGGGTGGAATTCCCTCCTT 166435
Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAA 480735
|||||| ||||| |||||| || || || || | | | || || ||||| |
Sbjct 166436 GTCTTGGATCTTGGCCTTGACATTGTCGATGGTGTCCGAAGACTCAA-CCTCGAGGGTGA 166494
Query 480736 TAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
||||||| || ||||| ||||| ||||| || ||
Sbjct 166495 TAGTTTTGCCCGTGAGGGTCTTGACGAAGATCTG 166528
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3268152476507204
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |