Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20glacialis_20[genbank_20GCA_5F002162575.1_202017-05-31] 623 sequences; 41,098,534 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq3 109 3e-19 >seq3 Length=2126074 Score = 109 bits (120), Expect = 3e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 25930 CTCCATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTC 25989 || ||| || ||||| |||||||||| ||||| || | ||| | || | | |||||| Sbjct 691772 CTTCATGAACAAATCAGGAATCCACAAGGCATAGAAGAGATCGCGTGCGCGAACTTCTTC 691831 Query 25990 TTTTCCGTGATTCTTTTTTAGATCTAAGAAA-TCAAAAATATCTGAGTGCCATGGTTCTA 26048 || ||||| ||||| |||||| |||||| || |||| ||| | |||||||| || | Sbjct 691832 CTTACCGTGGTTCTTGCGTAGATC-AAGAAACTCGAAAACATCGGCATGCCATGGCTCAA 691890 Query 26049 AATAGATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTT 26108 || | ||||||| ||| | ||| ||||| ||||| || ||||||||||| | Sbjct 691891 GGTAAACAGCAAAAGCACCCGGGCGTTTGTTACCACCCTGATCAACATATCTTGCAGTGT 691950 Query 26109 CATTGAAAACTTTCAACATTGGAACTAATCCAGTTGAAAATCCGTTTGT 26157 ||||||||| | ||| ||||| | ||| | ||| ||| || || Sbjct 691951 TGTTGAAAACTCGAAGCATGGGAACAATACCATTGGAATTTCCATTAGT 691999 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253038078714725