Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20glacialis_20[genbank_20GCA_5F002162575.1_202017-05-31]
623 sequences; 41,098,534 total letters
Query= NC_020845.1
Length=180977
Score E
Sequences producing significant alignments: (Bits) Value
seq9 123 3e-23
>seq9
Length=1212739
Score = 123 bits (136), Expect = 3e-23
Identities = 170/235 (72%), Gaps = 2/235 (1%)
Strand=Plus/Plus
Query 138183 ACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATGT 138242
|||||||| ||||| || || || || ||||| ||||| ||||| ||||||||||| ||
Sbjct 192140 ACACCAATTGGACCAACACCTGGTCCACCACCACCATGAGGAATGCAGAATGTCTTGTGA 192199
Query 138243 AAATTTAGATGACATACATCTGCACCATAGTCACATGGTTTTGCTAGACCTACCTGTGCA 138302
| || |||||||||||||| |||||| |||| ||| | || | || |||
Sbjct 192200 AGGTTAAGATGACATACATCGGCACCAATCTCACCAGGTGAACACAATCCAATTTGAGCA 192259
Query 138303 TTTAGATTTGCACCATCGAGATATACCTGACCACCATTGTCATGAACGATCTTACATATC 138362
|| | ||| ||||| || | ||||| |||||||||| | |||||| || | |||| |
Sbjct 192260 TTCATATTGGCACCGTCCATGTATACTTGACCACCATGTTGATGAACAATATCACAT-GC 192318
Query 138363 TGTCTGATGTT-TGTTTCAAATACACCATGAGTCGATGGATATGTAATCATAATA 138416
| || | || | ||||||||||||| || ||| ||||| ||||| |||
Sbjct 192319 AGCCTTAACTTCCGGTTCAAATACACCAAATGTACTTGGGTATGTGATCATGATA 192373
Score = 104 bits (114), Expect = 3e-17
Identities = 179/260 (69%), Gaps = 0/260 (0%)
Strand=Plus/Plus
Query 139260 AGTCCATCTGCACCATGATATGCTGCATAGAATCCAGACATATTTGCGAGCAGTGCTTGT 139319
||||| |||| || || || ||||||||||| || ||| || || | || ||||||
Sbjct 193286 AGTCCTTCTGGGCCGTGGTAAACTGCATAGAATGCACTCATGTTGGCCAACAATGCTTGA 193345
Query 139320 GCTGTGCAGATGTTACTGGTTGCTTTGTCTCTTCTAATATGCTGCTCTCTAGTTTGTAGT 139379
|| ||||| | ||||| || || || ||||| | ||||||||| |||||||||||||
Sbjct 193346 GCAGTGCACACATTACTAGTAGCCTTTTCTCTGCGAATATGCTGTTCTCTAGTTTGTAAA 193405
Query 139380 GCTAATCTGTATGCAGGATTGCCTTCGCTGTCCACTGACTGACCTACAATTCTGCCAGGT 139439
|| ||||| ||| || ||| || || || ||| | | | || ||
Sbjct 193406 GCCAATCTCATTGCTTTATCCCCTAGCCTATCTTTCGATACACCAATGAGACGTCCTGGG 193465
Query 139440 ATCTTTCTCTTATACTTGTCTGTTGTTGCAAAGAATGCAGCATGAGGACCTCCGTATCCC 139499
| |||||||||||||| || || ||||| |||||||| ||||| || || ||
Sbjct 193466 GTTTTTCTCTTATACTTATCGCCAACAGCGAAGAAAGCAGCATGGGGACCACCATAACCG 193525
Query 139500 ATAGGAATACCAAACCTTTG 139519
| |||| ||||| | |||
Sbjct 193526 AATGGAACTCCAAAACGTTG 193545
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 578993891049960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |