Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20glacialis_20[genbank_20GCA_5F002162575.1_202017-05-31] 623 sequences; 41,098,534 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq18 100 5e-16 seq34 98.7 2e-15 >seq18 Length=877782 Score = 100 bits (110), Expect = 5e-16 Identities = 167/238 (70%), Gaps = 4/238 (2%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCT--CTTTAGAAATAT 193182 |||||| |||||| | | || || |||| ||||| || || | |||| ||| | | Sbjct 575113 ATTTATTGACCACCACGAAGACGGAGCACCAAGTGCAAGGT-GCTTTCCTTTTGAA-TGT 575170 Query 193183 TATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTT 193242 | || || | | ||||| || || || || ||||| || || || |||| ||||| Sbjct 575171 TGTAATCCAAAAGAGTTCTGCCGTCCTCCAACTGCTTTCCAGCGAAGATCAATCGCTGTT 575230 Query 193243 GATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGG 193302 ||||||| || || || || ||||| || || || | || | ||| ||||||||| | Sbjct 575231 GATCAGGTGGAATGCCCTCCTTATCCTGAATCTTAGCCTTGACATTATCAATAGTATCCG 575290 Query 193303 AAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 |||| || || |||| || ||||| || || || | || || ||||| |||||||| Sbjct 575291 AAGATTCTACCTCTAATGTGATAGTCTTTCCAGTCAAGGTCTTAACAAAGATTTGCAT 575348 >seq34 Length=376069 Score = 98.7 bits (108), Expect = 2e-15 Identities = 131/182 (72%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 193179 ATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTC 193238 || || |||||||| | || | ||| || | ||| |||||||| || || |||| | Sbjct 166350 ATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCGAGTTGCTTTCCGGCGAAGATCAATCGC 166409 Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298 ||||| || || || ||||| || || ||||| || |||| || | ||| || || Sbjct 166410 TGTTGGTCGGGTGGAATTCCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTG 166469 Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358 || ||||||||||| || || || |||||||| || || || || || || || || ||| Sbjct 166470 TCCGAAGACTCAACCTCGAGGGTGATAGTTTTGCCCGTGAGGGTCTTGACGAAGATCTGC 166529 Query 193359 AT 193360 || Sbjct 166530 AT 166531 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899647393941360