Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20glacialis_20[genbank_20GCA_5F002162575.1_202017-05-31]
623 sequences; 41,098,534 total letters
Query= NC_022646.1
Length=101818
Score E
Sequences producing significant alignments: (Bits) Value
seq34 129 4e-25
seq18 114 8e-21
seq5 91.5 1e-13
>seq34
Length=376069
Score = 129 bits (142), Expect = 4e-25
Identities = 159/215 (74%), Gaps = 8/215 (4%)
Strand=Plus/Plus
Query 34769 ACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCC 34828
|||| ||||| ||| |||||| || ||||| ||||| || ||| |||| |||| ||
Sbjct 166323 ACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCG 166382
Query 34829 AGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTT 34888
|||||||||||||||||||||| ||| || ||||| | || | ||||||||||| |
Sbjct 166383 AGTTGCTTTCCGGCGAAGATCAATCGCTGTTGGTCGGGTGGAATTCCCTCCTTGTCTTGG 166442
Query 34889 ATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTATGGT 34944
|| || ||||| || | ||||| || | ||| || || | ||| || ||
Sbjct 166443 ATCTTGGCCTTGAC--AT--TGTCGATGGTGTCCGAAGACTCAACCTCGAGGGTGATAGT 166498
Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCATGA 34979
|| |||||||||||||| || |||||||||||||
Sbjct 166499 TTTGCCCGTGAGGGTCTTGACGAAGATCTGCATGA 166533
>seq18
Length=877782
Score = 114 bits (126), Expect = 8e-21
Identities = 136/184 (74%), Gaps = 8/184 (4%)
Strand=Plus/Plus
Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845
||||||||| ||||||||||| || ||| | || |||| || |||||||||||||||||
Sbjct 575613 CTCCTTCTGGATGTTATAGTCTGAGAGGGTACGACCATCCTCAAGTTGCTTTCCGGCGAA 575672
Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905
|||| ||||| ||||| | || | ||||| ||||| | || || ||||||
Sbjct 575673 AATCAAACGTTGTTGGTCGGGTGGGATGCCCTCTTTGTCTTGAATCTTGGCTTTGAC--- 575729
Query 34906 TGCTATCGAT----TCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCT 34961
| ||||||| ||| | || || || | ||| ||||||||||| ||||||||||
Sbjct 575730 -GTTATCGATAGTATCAGAAGATTCAACCTCGAGGGTGATGGTCTTTCCGGTGAGGGTCT 575788
Query 34962 TTAC 34965
| ||
Sbjct 575789 TAAC 575792
Score = 114 bits (126), Expect = 8e-21
Identities = 138/188 (73%), Gaps = 0/188 (0%)
Strand=Plus/Plus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
||||| || |||| ||| ||||||||||||||| ||||| || ||| |||| ||||
Sbjct 575877 AGGACGAGATGAAGTGTGGACTCCTTCTGAATGTTGTAGTCTGAGAGGGTGCGACCATCT 575936
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|| |||||||| || ||||| |||| || || || || | || | ||||||||||||
Sbjct 575937 TCAAGTTGCTTGCCTGCGAAAATCAAACGCTGTTGATCGGGAGGAATCCCCTCCTTGTCT 575996
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945
| || || |||||| | || | || ||| |||||| |||| ||| ||||||
Sbjct 575997 TGGATCTTGGCTTTGACATTGTCAATAGTGTCGCTGGACTCGACCTCAAGGGTGATGGTC 576056
Query 34946 TTTCCCGT 34953
||||| ||
Sbjct 576057 TTTCCAGT 576064
>seq5
Length=1928780
Score = 91.5 bits (100), Expect = 1e-13
Identities = 133/186 (72%), Gaps = 8/186 (4%)
Strand=Plus/Plus
Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847
|||| || ||||| || || || || | || | || || ||||||||||| |||||||
Sbjct 1275123 CCTTTTGGATGTTGTAATCTGAAAGAGTACGTCCGTCCTCAAGTTGCTTTCCAGCGAAGA 1275182
Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATG 34907
||| ||||| || || | || | ||||||||||| | || || || || ||
Sbjct 1275183 TCAAACGTTGTTGATCGGGGGGAATTCCCTCCTTGTCTTGGATCTTAGCCTTAAC--AT- 1275239
Query 34908 CTATCGAT----TCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTT 34963
| ||||| ||| || |||||| |||| ||| |||||||| ||||| ||||||||
Sbjct 1275240 -TGTCGATAGTGTCAGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTAAGGGTCTTG 1275298
Query 34964 ACAAAG 34969
|| |||
Sbjct 1275299 ACGAAG 1275304
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 325690327075637
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |