Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20glacialis_20[genbank_20GCA_5F002162575.1_202017-05-31] 623 sequences; 41,098,534 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq34 129 4e-25 seq18 114 8e-21 seq5 91.5 1e-13 >seq34 Length=376069 Score = 129 bits (142), Expect = 4e-25 Identities = 159/215 (74%), Gaps = 8/215 (4%) Strand=Plus/Plus Query 34769 ACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCC 34828 |||| ||||| ||| |||||| || ||||| ||||| || ||| |||| |||| || Sbjct 166323 ACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCG 166382 Query 34829 AGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTT 34888 |||||||||||||||||||||| ||| || ||||| | || | ||||||||||| | Sbjct 166383 AGTTGCTTTCCGGCGAAGATCAATCGCTGTTGGTCGGGTGGAATTCCCTCCTTGTCTTGG 166442 Query 34889 ATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTATGGT 34944 || || ||||| || | ||||| || | ||| || || | ||| || || Sbjct 166443 ATCTTGGCCTTGAC--AT--TGTCGATGGTGTCCGAAGACTCAACCTCGAGGGTGATAGT 166498 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCATGA 34979 || |||||||||||||| || ||||||||||||| Sbjct 166499 TTTGCCCGTGAGGGTCTTGACGAAGATCTGCATGA 166533 >seq18 Length=877782 Score = 114 bits (126), Expect = 8e-21 Identities = 136/184 (74%), Gaps = 8/184 (4%) Strand=Plus/Plus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||||||||| ||||||||||| || ||| | || |||| || ||||||||||||||||| Sbjct 575613 CTCCTTCTGGATGTTATAGTCTGAGAGGGTACGACCATCCTCAAGTTGCTTTCCGGCGAA 575672 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 |||| ||||| ||||| | || | ||||| ||||| | || || |||||| Sbjct 575673 AATCAAACGTTGTTGGTCGGGTGGGATGCCCTCTTTGTCTTGAATCTTGGCTTTGAC--- 575729 Query 34906 TGCTATCGAT----TCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCT 34961 | ||||||| ||| | || || || | ||| ||||||||||| |||||||||| Sbjct 575730 -GTTATCGATAGTATCAGAAGATTCAACCTCGAGGGTGATGGTCTTTCCGGTGAGGGTCT 575788 Query 34962 TTAC 34965 | || Sbjct 575789 TAAC 575792 Score = 114 bits (126), Expect = 8e-21 Identities = 138/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| || |||| ||| ||||||||||||||| ||||| || ||| |||| |||| Sbjct 575877 AGGACGAGATGAAGTGTGGACTCCTTCTGAATGTTGTAGTCTGAGAGGGTGCGACCATCT 575936 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || |||||||| || ||||| |||| || || || || | || | |||||||||||| Sbjct 575937 TCAAGTTGCTTGCCTGCGAAAATCAAACGCTGTTGATCGGGAGGAATCCCCTCCTTGTCT 575996 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | || | || ||| |||||| |||| ||| |||||| Sbjct 575997 TGGATCTTGGCTTTGACATTGTCAATAGTGTCGCTGGACTCGACCTCAAGGGTGATGGTC 576056 Query 34946 TTTCCCGT 34953 ||||| || Sbjct 576057 TTTCCAGT 576064 >seq5 Length=1928780 Score = 91.5 bits (100), Expect = 1e-13 Identities = 133/186 (72%), Gaps = 8/186 (4%) Strand=Plus/Plus Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847 |||| || ||||| || || || || | || | || || ||||||||||| ||||||| Sbjct 1275123 CCTTTTGGATGTTGTAATCTGAAAGAGTACGTCCGTCCTCAAGTTGCTTTCCAGCGAAGA 1275182 Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATG 34907 ||| ||||| || || | || | ||||||||||| | || || || || || Sbjct 1275183 TCAAACGTTGTTGATCGGGGGGAATTCCCTCCTTGTCTTGGATCTTAGCCTTAAC--AT- 1275239 Query 34908 CTATCGAT----TCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTT 34963 | ||||| ||| || |||||| |||| ||| |||||||| ||||| |||||||| Sbjct 1275240 -TGTCGATAGTGTCAGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTAAGGGTCTTG 1275298 Query 34964 ACAAAG 34969 || ||| Sbjct 1275299 ACGAAG 1275304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325690327075637