Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20glacialis_20[genbank_20GCA_5F002162575.1_202017-05-31] 623 sequences; 41,098,534 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq34 129 5e-25 seq18 109 4e-19 >seq34 Length=376069 Score = 129 bits (142), Expect = 5e-25 Identities = 158/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| | |||||| ||||| ||||| || ||||| ||||| || || | || |||||| Sbjct 166316 ACGTAACACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAAAGGGTGCGGCC 166375 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| |||||||| || || || | ||||||| || || || || ||||| ||||| || Sbjct 166376 ATCCTCGAGTTGCTTTCCGGCGAAGATCAATCGCTGTTGGTCGGGTGGAATTCCCTCCTT 166435 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 |||||| | || |||||| | || | ||||| ||| || || || || || || Sbjct 166436 GTCTTGGATCTTGGCCTTGACATTGTCGATGGTGTCCGAAGACTCAACCTCGAGGGTGAT 166495 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||||||| || | ||| || || || |||||||| Sbjct 166496 AGTTTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 166531 >seq18 Length=877782 Score = 109 bits (120), Expect = 4e-19 Identities = 156/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| |||||||| || | ||| ||| ||||||||||| |||||| || || | Sbjct 575133 ACGGAGCACCAAGTGCAAGGTGCTTTCCTTTTGAATGTTGTAATCCAAAAGAGTTCTGCC 575192 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 || || | || || ||||| | ||||||| || ||||| || ||||| ||||| || Sbjct 575193 GTCCTCCAACTGCTTTCCAGCGAAGATCAATCGCTGTTGATCAGGTGGAATGCCCTCCTT 575252 Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 || || ||| || | |||||| | || | ||| || ||| |||||| || | || | Sbjct 575253 ATCCTG-AATCTTAGCCTTGACATTATCAATAGTATCCGAAGATTCTACCTCTAATGTGA 575311 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||| || ||||| ||||| |||||||| || ||||| Sbjct 575312 TAGTCTTTCCAGTCAAGGTCTTAACAAAGATTTGCAT 575348 Score = 105 bits (116), Expect = 5e-18 Identities = 149/207 (72%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCA 29634 || |||||||| || || || || || || |||||||| || | | ||| ||| ||| Sbjct 575593 AGAACCAAATGGAGAGTAGACTCCTTCTGGATGTTATAGTCTGAGAGGGTACGACCATCC 575652 Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCT 29694 || ||||| || || || | ||||| | ||| || || || || || |||||||||||| Sbjct 575653 TCAAGTTGCTTTCCGGCGAAAATCAAACGTTGTTGGTCGGGTGGGATGCCCTCTTTGTCT 575712 Query 29695 TGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || ||| || | |||||| | || | ||| |||||| ||| || || || || || || Sbjct 575713 TG-AATCTTGGCTTTGACGTTATCGATAGTATCAGAAGATTCAACCTCGAGGGTGATGGT 575771 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATAT 29780 || || || | ||| ||||| | ||| Sbjct 575772 CTTTCCGGTGAGGGTCTTAACGACTAT 575798 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || |||||||| | || ||||||||||| ||||| || || | || || || Sbjct 575361 ACGAAGGACCAAATGTAAAGTTGATTCTTTTTGGATGTTGTAGTCGGAAAGAGTTCGGCC 575420 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || ||||| || |||||| | || | | ||| || || || || ||||||||||| Sbjct 575421 ATCCTCAAGTTGCTTACCAGCAAAGATAAGACGTTGTTGGTCAGGTGGGATACCCTCTTT 575480 Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 |||||| ||| || | || ||| | || | || || || || || || | ||| | Sbjct 575481 GTCTTG-AATCTTAGCCTTCACATTGTCGATGGTATCCGACGACTCAACCTCTAAAGTGA 575539 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | || || || || | || || || || |||||||| Sbjct 575540 TTGTCTTTCCGGTGAGAGTCTTGACGAAGATCTGCAT 575576 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385216275102843