Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20glacialis_20[genbank_20GCA_5F002162575.1_202017-05-31] 623 sequences; 41,098,534 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq18 129 1e-24 >seq18 Length=877782 Score = 129 bits (142), Expect = 1e-24 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| || || || || | ||| |||||||| || || || || || | Sbjct 575348 TACCACCACGAAGACGAAGGACCAAATGTAAAGTTGATTCTTTTTGGATGTTGTAGTCGG 575407 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| ||| || || || ||||| || ||||||||||| || | |||||| || || | Sbjct 575408 AAAGAGTTCGGCCATCCTCAAGTTGCTTACCAGCAAAGATAAGACGTTGTTGGTCAGGTG 575467 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || || || ||||||||||| || || ||||| || || ||||| | || | Sbjct 575468 GGATACCCTCTTTGTCTTGAATCTTAGCCTTCACATTGTCGATGGTATCCGACGACTCAA 575527 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || ||||| || ||||| || || | ||||| || || |||||||| Sbjct 575528 CCTCTAAAGTGATTGTCTTTCCGGTGAGAGTCTTGACGAAGATCTGCAT 575576 Score = 114 bits (126), Expect = 3e-20 Identities = 149/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 82599 AGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCT 82658 ||||| || || |||||||| || ||||| || ||||| || || || | | ||| || Sbjct 575593 AGAACCAAATGGAGAGTAGACTCCTTCTGGATGTTATAGTCTGAGAGGGTACGACCATCC 575652 Query 82659 TCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCT 82718 || ||||| ||||| || || || | | |||||| || || || || || || || ||| Sbjct 575653 TCAAGTTGCTTTCCGGCGAAAATCAAACGTTGTTGGTCGGGTGGGATGCCCTCTTTGTCT 575712 Query 82719 TGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTC 82778 |||||||| ||||| || || || || |||||| || ||| || || | || || ||| Sbjct 575713 TGAATCTTGGCTTTGACGTTATCGATAGTATCAGAAGATTCAACCTCGAGGGTGATGGTC 575772 Query 82779 TTGCCTGTCAACGTCTTTACAAATAT 82804 || || || | ||||| || | ||| Sbjct 575773 TTTCCGGTGAGGGTCTTAACGACTAT 575798 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981819362871197