Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20glacialis_20[genbank_20GCA_5F002162575.1_202017-05-31]
623 sequences; 41,098,534 total letters
Query= NC_026922.1
Length=157977
Score E
Sequences producing significant alignments: (Bits) Value
seq34 122 9e-23
seq18 113 5e-20
>seq34
Length=376069
Score = 122 bits (134), Expect = 9e-23
Identities = 163/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546
|| || | ||| || ||||| | ||| || ||||| |||||||| |||||||||||| |
Sbjct 166305 CCACCACGGAGACGTAACACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAA 166364
Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606
| |||| | || ||||| || || || || || ||||| ||||| || ||||| ||
Sbjct 166365 AGGGTGCGGCCATCCTCGAGTTGCTTTCCGGCGAAGATCAATCGCTGTTGGTCGGGTGGA 166424
Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666
|| || || || ||||| || || ||||| ||| | ||||| || || || ||
Sbjct 166425 ATTCCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTGTCCGAAGACTCAACC 166484
Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713
||||| || || ||||| || || | || || ||||| || |||||
Sbjct 166485 TCGAGGGTGATAGTTTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 166531
>seq18
Length=877782
Score = 113 bits (124), Expect = 5e-20
Identities = 136/185 (74%), Gaps = 0/185 (0%)
Strand=Plus/Plus
Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564
||||| || || ||||| ||||| |||||||||||||| | |||| || || ||
Sbjct 575880 ACGAGATGAAGTGTGGACTCCTTCTGAATGTTGTAGTCTGAGAGGGTGCGACCATCTTCA 575939
Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624
|| || |||||||| |||||||||||||| |||||||| || || || || || |||||
Sbjct 575940 AGTTGCTTGCCTGCGAAAATCAAACGCTGTTGATCGGGAGGAATCCCCTCCTTGTCTTGG 575999
Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684
|| || |||||| ||| | |||||| || || || || || || ||||| ||
Sbjct 576000 ATCTTGGCTTTGACATTGTCAATAGTGTCGCTGGACTCGACCTCAAGGGTGATGGTCTTT 576059
Query 134685 CCGGT 134689
|| ||
Sbjct 576060 CCAGT 576064
Score = 100 bits (110), Expect = 3e-16
Identities = 138/193 (72%), Gaps = 0/193 (0%)
Strand=Plus/Plus
Query 134511 TGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGT 134570
|| || || || ||||| || ||||| ||||| | ||| || || || || ||
Sbjct 575602 TGGAGAGTAGACTCCTTCTGGATGTTATAGTCTGAGAGGGTACGACCATCCTCAAGTTGC 575661
Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630
|| || || ||||||||||| || || ||||| || ||||| ||||| |||||||| ||
Sbjct 575662 TTTCCGGCGAAAATCAAACGTTGTTGGTCGGGTGGGATGCCCTCTTTGTCTTGAATCTTG 575721
Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690
|||||| || | || || || ||||| || ||||| || ||||| || |||||
Sbjct 575722 GCTTTGACGTTATCGATAGTATCAGAAGATTCAACCTCGAGGGTGATGGTCTTTCCGGTG 575781
Query 134691 AAAGTTTTAACGA 134703
| || |||||||
Sbjct 575782 AGGGTCTTAACGA 575794
Score = 87.8 bits (96), Expect = 2e-12
Identities = 141/203 (69%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 134511 TGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGT 134570
|||| || ||||| ||||| |||||||||||| || || | || || || ||
Sbjct 575374 TGTAAAGTTGATTCTTTTTGGATGTTGTAGTCGGAAAGAGTTCGGCCATCCTCAAGTTGC 575433
Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630
|| || ||||| || | ||| || || || || || || || ||||| |||||||| ||
Sbjct 575434 TTACCAGCAAAGATAAGACGTTGTTGGTCAGGTGGGATACCCTCTTTGTCTTGAATCTTA 575493
Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690
|| || ||| | || || ||||| || || || | ||| || || || |||||
Sbjct 575494 GCCTTCACATTGTCGATGGTATCCGACGACTCAACCTCTAAAGTGATTGTCTTTCCGGTG 575553
Query 134691 AAAGTTTTAACGAAAATTTGCAT 134713
| ||| || ||||| || |||||
Sbjct 575554 AGAGTCTTGACGAAGATCTGCAT 575576
Score = 82.4 bits (90), Expect = 8e-11
Identities = 149/218 (68%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555
|| || | ||| | ||| | ||| |||||||||||||||||| || || ||
Sbjct 575131 AGACGGAGCACCAAGTGCAAGGTGCTTTCCTTTTGAATGTTGTAATCCAAAAGAGTTCTG 575190
Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615
||| || | ||| || || || || ||||| ||||| ||||| || || ||||| ||
Sbjct 575191 CCGTCCTCCAACTGCTTTCCAGCGAAGATCAATCGCTGTTGATCAGGTGGAATGCCCTCC 575250
Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675
|| || ||||| || ||||| || | || || || ||||| || || | ||
Sbjct 575251 TTATCCTGAATCTTAGCCTTGACATTATCAATAGTATCCGAAGATTCTACCTCTAATGTG 575310
Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713
|| || || || || || || ||||| || ||||||||
Sbjct 575311 ATAGTCTTTCCAGTCAAGGTCTTAACAAAGATTTGCAT 575348
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 505394464209960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |