Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20glacialis_20[genbank_20GCA_5F002162575.1_202017-05-31]
623 sequences; 41,098,534 total letters
Query= NC_028091.1
Length=196300
Score E
Sequences producing significant alignments: (Bits) Value
seq3 219 5e-52
seq9 102 1e-16
seq2 96.9 4e-15
>seq3
Length=2126074
Score = 219 bits (242), Expect = 5e-52
Identities = 1158/1815 (64%), Gaps = 63/1815 (3%)
Strand=Plus/Plus
Query 110368 ATAGTACATCCCGGTCTTGAGTCCTTGTTTCCATGCGTACATATGCATAGAAGAGAGCTT 110427
||||||||| |||||||| | || ||||||| | | |||||||| | || |||
Sbjct 690575 ATAGTACATTCCGGTCTTCAAACCCAATTTCCATCCAGCAAAGTGCATAGATGTGATCTT 690634
Query 110428 GGACATCGTTGGACTTTCCATGAAGAGGTTCATACTTTGACTTTGGTCAATGAAGCGCCC 110487
| ||| || ||| | |||| | |||||| |||| ||| || || || ||
Sbjct 690635 GCCCATTGTAGGATCCTTCATGTGAATGTTCATTGATTGAGATTGATCGATAAATGCACC 690694
Query 110488 CCGTTGTGCCGCCATATCAATGACA--TCCTTCATCTTAATTTCCCAAACTGTGCGATAG 110545
|| | || ||||| | || | || || | |||||||||||| || ||
Sbjct 690695 GCGATCAGCAGCCATTTGAACAATTGTTCGTTGAGA--AATTTCCCAAACAGTCTTGTAA 690752
Query 110546 AGATTCTTGATATCATCTGGGATATCTGAGATATTCTGGATGGAACCCCCCGCCTTCACC 110605
|| |||||| ||| |||| || | | ||| || || || || || || ||| |
Sbjct 690753 AGGGCCTTGATGTCAGCTGGAATGTTGGGGATGTTTTGAATAGATCCACCA----TCAGC 690808
Query 110606 A-TGAGA---TCCTTCATATCCTTGGACCAGAGACCAATCTTCTTGAGGTCATTGACGAG 110661
| ||| | | |||||| | | ||||| ||||| || | ||||| |||| |||
Sbjct 690809 AATGATACGGTTCTTCATGTTGTCAGACCAAAGACCCATATCAACAAGGTCTTTGAGGAG 690868
Query 110662 GTGCTTGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGT 110721
||| |||| || || || || || | | ||||||||||| ||
Sbjct 690869 CCATGGGTTAACAACTTGGAATTCTCCGGCCAGAACACGACGTGAGTAGATGTTTGAAGT 690928
Query 110722 GTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGG 110781
|||||||||||| ||||| || ||| | |||||||| ||| || || ||||| ||
Sbjct 690929 GTATGGTTCAAAACATTCGTTGAAACCGAGGATTTGTGAAGTGCTAGCAGTAGGCATAGG 690988
Query 110782 TGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACATCCCA 110841
||| | | |||| ||| |||| || | | ||||||| || ||| | | |||||
Sbjct 690989 TGCAACAAGAAGAGAGTTGCGAATTCCGTGTTGCTTGATGGATTGCTTCAAAGAGTCCCA 691048
Query 110842 GTCGTAGT--TGAGCTTGGTTTCACCTTCCCACATGTCAAACTGAAGCACCCCTTGGGAC 110899
|| | | || || | || ||||||||||| | || || | || | |||
Sbjct 691049 ATCCCACAAATCAGAA-GGAGTGACGC-CCCACATGTCATATTGGAGTTCACCCTTGGAG 691106
Query 110900 GCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTC-ACAGCTCGC 110958
| ||||| || | | ||||| || | || | | | || | || |||| |
Sbjct 691107 ACTGGAGAGCCTTGGTAAGTTTCGTACGGGCCAAGTTCCTTTGCGATCTCGACAGATGAG 691166
Query 110959 CTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATC 111018
|| ||| | ||||| || ||||| ||||| || | || | | |||||||||
Sbjct 691167 GTCAAGGCA-GCGTGGTAGATGGTCTCAAAAATCTGGATGTTGAGGTGCTTGGCTTCTGG 691225
Query 111019 TGAATCAAATGCGTAGCGGCACAA--AATAAATACATCCGCGAGACCTTGAACACCCAAA 111076
|| || |||| | || | | | || ||| |||| || |||||||||||||| | |
Sbjct 691226 CGAGTCGAATG-GAAGACGAAGAGCCAAGAAAG-CATCAGCAAGACCTTGAACACCAACA 691283
Query 111077 CCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTG 111136
| ||||||| || || | ||| | ||| || | || |||||| | || |
Sbjct 691284 GCGATAGGTCGATGACGGAAATTGCTCCTTCTGGCTTCTTGTACTGGATAATAGTTGATA 691343
Query 111137 TCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATT-TCATGAAGTTTTTCATA 111195
||||||| ||| | ||| | || | ||| | | || ||||| |||| |
Sbjct 691344 TCAATGATCTTGTTCAAGTTTCTAACGACCA-CTTGGACAACCTCGTGAAGCTTTTGGAA 691402
Query 111196 ATCAAAAGTGCGAGTCTC-TTCAT--TGACATACTTTGGAAGGGCGATTGATGCCAAATT 111252
|||| |||| | ||| ||||| |||| | |||| || || ||||| ||||| ||
Sbjct 691403 ATCATAAGTTCC---CTCATTCATGTTGACGAAAGTTGGTAGAGCAATTGAAGCCAAGTT 691459
Query 111253 GCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACT 111312
|| ||| |||||| | | |||||| | || ||||| || |||||||| ||
Sbjct 691460 ACAGCAAGCAACCTCATCTGGTGCAGAGTACTCGACGATCTCTGTGCACAAGTTGGAGCT 691519
Query 111313 CTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCAT 111372
||| || || | ||||||||||| |||||||||||||| ||||| ||||| |||||
Sbjct 691520 GCGAATAGTACCAAGGTTCTTTTGGTTGCTCTTCTTGTTGCATGCATCTTTGTAAAGCAT 691579
Query 111373 GTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAA-CATCGGCGGCTG 111431
| | || | || || || || || | | ||||||| | ||| | | | | | ||
Sbjct 691580 GAAAGGATTTCCGGTTTCGGTTTGAGCCTCAAGAATAGAGTACCAGAGCTTTTGAGCCTT 691639
Query 111432 G-TACAATGGCGTTGGCCCGTCCCT-CCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTC 111489
| || | ||| ||| | ||| || || || | ||||||||| ||||||||
Sbjct 691640 GATAGTCTTGCGA---CCCTTTCCTGCCTTTTCATAACTCTCGTAGAGGGCCTCAAACTC 691696
Query 111490 CTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGA-CAGAAAAGAGACCATTGAC 111548
||| || | || | | ||| || || || ||| || | ||||| ||||| |
Sbjct 691697 CTCGCCATAAACATCTGCCAAACCAGG-GCATTCATTGGGGCACATAAGAGTCCATTCTC 691755
Query 111549 CACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTC 111608
|| | || || ||||||||||| | || |||||||||| || | |||||||| |
Sbjct 691756 CATTCTTTTCGACACGCTTCATGAACAAATCAGGAATCCACAAGGCATAGAAGAGATCGC 691815
Query 111609 TACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCG 111668
||| | ||||| | ||| ||||| |||| ||||| ||||| | | ||| |
Sbjct 691816 GTGCGCGAACTTCTTCCTTACCGTGGTTCTTGCGTAGATCAAGAAACTCGAAAACATCGG 691875
Query 111669 CGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCG---ACGCCCAGCTTGATTTA 111725
| |||||||||||||| || || || | || ||| || ||| | |||| |
Sbjct 691876 CATGCCATGGCTCAAGGTAAACAGCAAAAGCACCCGGGCGTTTGTTACCACCCTGATCAA 691935
Query 111726 CATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCAT 111785
|||| | || ||| ||| || || |||||||| |||| |||||||| || | ||||
Sbjct 691936 CATATCTTGCAGTGTTGTTGAAAACTCGAAGCATGGGAACAATACCATTGGAATTTCCAT 691995
Query 111786 TTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGA---TGTGCAT------CC 111836
| || || | ||| ||| || | | || ||| |||| || |
Sbjct 691996 TAGTACC-------GGCGATGTAT--GCACCAGTAGCACGGATTCTGTGAATGTTGAGAC 692046
Query 111837 CAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGT 111896
||||||| || || ||||||||| ||||| | | | ||| | |||||||| |
Sbjct 692047 CAATACCACCGGCATTCTTTGAGATCATGGCACAAATCTTCAAAGTATCGTAGATACCAT 692106
Query 111897 TGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTAC 111956
|| ||||| || || |||| |||||||| || | || | | ||| ||||
Sbjct 692107 CAATACTATCCTCTTTCATGTCGATGAGGAAGCACGACGAAAGTTGTGCTTGTGGAGTAC 692166
Query 111957 CAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TGGGACATCTTGTCGTAT 112015
| ||| ||||| ||||| | || || | || ||| | | |||||| || ||||
Sbjct 692167 CCGCAGAAAAGAGCGTTGGGGAAGCATGTGT-AAAGTACTTGTTTGACATCAAGTTGTAT 692225
Query 112016 GTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATG 112075
|| || | || || || || || ||||| || || | || || ||||||| |||
Sbjct 692226 GTTTCGATAGCACTTTCGATATCATCACCGTGAATACCCACGGCAACACGCATGATCATT 692285
Query 112076 TACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATA-GCTCTTCTCAAGGGT 112134
| || || ||| | | ||||| || ||| |||||| | || |||||||||
Sbjct 692286 TGTTGAGGACGCTCCGCAACTTTACCATCAAGACGTAAAAGATATGATC-GCTCAAGGGT 692344
Query 112135 TTTGAGACCAAAGTA 112149
|||| || |||||
Sbjct 692345 CTTGAACCCGAAGTA 692359
>seq9
Length=1212739
Score = 102 bits (112), Expect = 1e-16
Identities = 153/212 (72%), Gaps = 4/212 (2%)
Strand=Plus/Minus
Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729
||||||||| ||||| ||||| || ||||| || |||||| || || | |||||||||
Sbjct 165455 GTGGAGACCTTCATCACGGGAGATGAGTTCGTTGGAGAAGGTGAGTCCAGCCATGAGACC 165396
Query 122730 CCGCTTCTTCAACCAATAAATAGC-GCAGAATGACCCGGAGAAGAAGATACCCTCCACAC 122788
||||| || | ||| | || | ||| || || || |||||||||||||| || |||
Sbjct 165395 ACGCTTTTTGAGCCAGAAGATTGATGCAAAA-GATCCAGAGAAGAAGATACCTTCAACAG 165337
Query 122789 ACGCAAACGCAAAAAGGCGTTCGGCGAAGG-AGCGAGACTTTGCATCAAACCATTTCATT 122847
|| || |||| || |||| || |||| || | ||| | |||| |||||| |
Sbjct 165336 CGGCGAATGCAACGAGACGTTGAGCAAAGGTAGAG-CTCTTATCTTCAATCCATTTGACA 165278
Query 122848 GCCCATTTCGCCTTCTTCTCAATACATGGTAC 122879
||||| | ||||| |||| ||| || || ||
Sbjct 165277 GCCCAATCGGCCTTTTTCTTAATGCAAGGAAC 165246
>seq2
Length=2344949
Score = 96.9 bits (106), Expect = 4e-15
Identities = 172/251 (69%), Gaps = 0/251 (0%)
Strand=Plus/Plus
Query 164605 ATGGTCGTGTTGCACCACGATCCGGTCTCGCTGTGAAGCATGGTATTCAAGTTGGTGCGG 164664
|||| || | || ||||| ||||||||||| |||||| ||| | |||||| |
Sbjct 1542139 ATGGCCGCATCGCCCCACGTTCCGGTCTCGCCTCTAAGCATATGATTGATACTGGTGCCG 1542198
Query 164665 GTGTTATTGATCCCGACTATACAGGTGAAGTCAAAGTCGTTCTCTTCAATCACGGAGACA 164724
|||| ||||| | || |||| ||| |||| | ||| | ||||| || ||||| || |
Sbjct 1542199 GTGTAATTGACGCTGATTATAGGGGTCAAGTAAGAGTACTCCTCTTTAACCACGGCGAAA 1542258
Query 164725 AAGACTTTGAGGTAAAGAAAGGGGATCGCATCGCACAACTTGTCCTTGAGCGCTGTGAAA 164784
| || | |||||| ||| | || ||||| || ||||| | | | ||| | | | |
Sbjct 1542259 AGGATTATGAGGTGAAGGAGGGCGATCGTATTGCACAGTTGATTTTGGAGAGGATTTATA 1542318
Query 164785 CACCCGATGTGGAGGAAATTGGTGTTCTTGAAGAGACGGAGAGAGGTGCGGGTGGATTTG 164844
|||| || || |||| | ||| | ||||||| | ||| |||| ||| || || |
Sbjct 1542319 CACCTGAGGTCACGGAAGTCTTGGTTTTGGAAGAGAGTGTGAGGGGTGAGGGGGGTTTCG 1542378
Query 164845 GATCTACTGGT 164855
|| |||||||
Sbjct 1542379 GAAGTACTGGT 1542389
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 628027109200800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |