Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20glacialis_20[genbank_20GCA_5F002162575.1_202017-05-31] 623 sequences; 41,098,534 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq3 219 5e-52 seq9 102 1e-16 seq2 96.9 4e-15 >seq3 Length=2126074 Score = 219 bits (242), Expect = 5e-52 Identities = 1158/1815 (64%), Gaps = 63/1815 (3%) Strand=Plus/Plus Query 110368 ATAGTACATCCCGGTCTTGAGTCCTTGTTTCCATGCGTACATATGCATAGAAGAGAGCTT 110427 ||||||||| |||||||| | || ||||||| | | |||||||| | || ||| Sbjct 690575 ATAGTACATTCCGGTCTTCAAACCCAATTTCCATCCAGCAAAGTGCATAGATGTGATCTT 690634 Query 110428 GGACATCGTTGGACTTTCCATGAAGAGGTTCATACTTTGACTTTGGTCAATGAAGCGCCC 110487 | ||| || ||| | |||| | |||||| |||| ||| || || || || Sbjct 690635 GCCCATTGTAGGATCCTTCATGTGAATGTTCATTGATTGAGATTGATCGATAAATGCACC 690694 Query 110488 CCGTTGTGCCGCCATATCAATGACA--TCCTTCATCTTAATTTCCCAAACTGTGCGATAG 110545 || | || ||||| | || | || || | |||||||||||| || || Sbjct 690695 GCGATCAGCAGCCATTTGAACAATTGTTCGTTGAGA--AATTTCCCAAACAGTCTTGTAA 690752 Query 110546 AGATTCTTGATATCATCTGGGATATCTGAGATATTCTGGATGGAACCCCCCGCCTTCACC 110605 || |||||| ||| |||| || | | ||| || || || || || || ||| | Sbjct 690753 AGGGCCTTGATGTCAGCTGGAATGTTGGGGATGTTTTGAATAGATCCACCA----TCAGC 690808 Query 110606 A-TGAGA---TCCTTCATATCCTTGGACCAGAGACCAATCTTCTTGAGGTCATTGACGAG 110661 | ||| | | |||||| | | ||||| ||||| || | ||||| |||| ||| Sbjct 690809 AATGATACGGTTCTTCATGTTGTCAGACCAAAGACCCATATCAACAAGGTCTTTGAGGAG 690868 Query 110662 GTGCTTGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGT 110721 ||| |||| || || || || || | | ||||||||||| || Sbjct 690869 CCATGGGTTAACAACTTGGAATTCTCCGGCCAGAACACGACGTGAGTAGATGTTTGAAGT 690928 Query 110722 GTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGG 110781 |||||||||||| ||||| || ||| | |||||||| ||| || || ||||| || Sbjct 690929 GTATGGTTCAAAACATTCGTTGAAACCGAGGATTTGTGAAGTGCTAGCAGTAGGCATAGG 690988 Query 110782 TGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACATCCCA 110841 ||| | | |||| ||| |||| || | | ||||||| || ||| | | ||||| Sbjct 690989 TGCAACAAGAAGAGAGTTGCGAATTCCGTGTTGCTTGATGGATTGCTTCAAAGAGTCCCA 691048 Query 110842 GTCGTAGT--TGAGCTTGGTTTCACCTTCCCACATGTCAAACTGAAGCACCCCTTGGGAC 110899 || | | || || | || ||||||||||| | || || | || | ||| Sbjct 691049 ATCCCACAAATCAGAA-GGAGTGACGC-CCCACATGTCATATTGGAGTTCACCCTTGGAG 691106 Query 110900 GCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTC-ACAGCTCGC 110958 | ||||| || | | ||||| || | || | | | || | || |||| | Sbjct 691107 ACTGGAGAGCCTTGGTAAGTTTCGTACGGGCCAAGTTCCTTTGCGATCTCGACAGATGAG 691166 Query 110959 CTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATC 111018 || ||| | ||||| || ||||| ||||| || | || | | ||||||||| Sbjct 691167 GTCAAGGCA-GCGTGGTAGATGGTCTCAAAAATCTGGATGTTGAGGTGCTTGGCTTCTGG 691225 Query 111019 TGAATCAAATGCGTAGCGGCACAA--AATAAATACATCCGCGAGACCTTGAACACCCAAA 111076 || || |||| | || | | | || ||| |||| || |||||||||||||| | | Sbjct 691226 CGAGTCGAATG-GAAGACGAAGAGCCAAGAAAG-CATCAGCAAGACCTTGAACACCAACA 691283 Query 111077 CCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTG 111136 | ||||||| || || | ||| | ||| || | || |||||| | || | Sbjct 691284 GCGATAGGTCGATGACGGAAATTGCTCCTTCTGGCTTCTTGTACTGGATAATAGTTGATA 691343 Query 111137 TCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATT-TCATGAAGTTTTTCATA 111195 ||||||| ||| | ||| | || | ||| | | || ||||| |||| | Sbjct 691344 TCAATGATCTTGTTCAAGTTTCTAACGACCA-CTTGGACAACCTCGTGAAGCTTTTGGAA 691402 Query 111196 ATCAAAAGTGCGAGTCTC-TTCAT--TGACATACTTTGGAAGGGCGATTGATGCCAAATT 111252 |||| |||| | ||| ||||| |||| | |||| || || ||||| ||||| || Sbjct 691403 ATCATAAGTTCC---CTCATTCATGTTGACGAAAGTTGGTAGAGCAATTGAAGCCAAGTT 691459 Query 111253 GCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACT 111312 || ||| |||||| | | |||||| | || ||||| || |||||||| || Sbjct 691460 ACAGCAAGCAACCTCATCTGGTGCAGAGTACTCGACGATCTCTGTGCACAAGTTGGAGCT 691519 Query 111313 CTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCAT 111372 ||| || || | ||||||||||| |||||||||||||| ||||| ||||| ||||| Sbjct 691520 GCGAATAGTACCAAGGTTCTTTTGGTTGCTCTTCTTGTTGCATGCATCTTTGTAAAGCAT 691579 Query 111373 GTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAA-CATCGGCGGCTG 111431 | | || | || || || || || | | ||||||| | ||| | | | | | || Sbjct 691580 GAAAGGATTTCCGGTTTCGGTTTGAGCCTCAAGAATAGAGTACCAGAGCTTTTGAGCCTT 691639 Query 111432 G-TACAATGGCGTTGGCCCGTCCCT-CCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTC 111489 | || | ||| ||| | ||| || || || | ||||||||| |||||||| Sbjct 691640 GATAGTCTTGCGA---CCCTTTCCTGCCTTTTCATAACTCTCGTAGAGGGCCTCAAACTC 691696 Query 111490 CTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGA-CAGAAAAGAGACCATTGAC 111548 ||| || | || | | ||| || || || ||| || | ||||| ||||| | Sbjct 691697 CTCGCCATAAACATCTGCCAAACCAGG-GCATTCATTGGGGCACATAAGAGTCCATTCTC 691755 Query 111549 CACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTC 111608 || | || || ||||||||||| | || |||||||||| || | |||||||| | Sbjct 691756 CATTCTTTTCGACACGCTTCATGAACAAATCAGGAATCCACAAGGCATAGAAGAGATCGC 691815 Query 111609 TACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCG 111668 ||| | ||||| | ||| ||||| |||| ||||| ||||| | | ||| | Sbjct 691816 GTGCGCGAACTTCTTCCTTACCGTGGTTCTTGCGTAGATCAAGAAACTCGAAAACATCGG 691875 Query 111669 CGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCG---ACGCCCAGCTTGATTTA 111725 | |||||||||||||| || || || | || ||| || ||| | |||| | Sbjct 691876 CATGCCATGGCTCAAGGTAAACAGCAAAAGCACCCGGGCGTTTGTTACCACCCTGATCAA 691935 Query 111726 CATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCAT 111785 |||| | || ||| ||| || || |||||||| |||| |||||||| || | |||| Sbjct 691936 CATATCTTGCAGTGTTGTTGAAAACTCGAAGCATGGGAACAATACCATTGGAATTTCCAT 691995 Query 111786 TTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGA---TGTGCAT------CC 111836 | || || | ||| ||| || | | || ||| |||| || | Sbjct 691996 TAGTACC-------GGCGATGTAT--GCACCAGTAGCACGGATTCTGTGAATGTTGAGAC 692046 Query 111837 CAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGT 111896 ||||||| || || ||||||||| ||||| | | | ||| | |||||||| | Sbjct 692047 CAATACCACCGGCATTCTTTGAGATCATGGCACAAATCTTCAAAGTATCGTAGATACCAT 692106 Query 111897 TGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTAC 111956 || ||||| || || |||| |||||||| || | || | | ||| |||| Sbjct 692107 CAATACTATCCTCTTTCATGTCGATGAGGAAGCACGACGAAAGTTGTGCTTGTGGAGTAC 692166 Query 111957 CAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TGGGACATCTTGTCGTAT 112015 | ||| ||||| ||||| | || || | || ||| | | |||||| || |||| Sbjct 692167 CCGCAGAAAAGAGCGTTGGGGAAGCATGTGT-AAAGTACTTGTTTGACATCAAGTTGTAT 692225 Query 112016 GTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATG 112075 || || | || || || || || ||||| || || | || || ||||||| ||| Sbjct 692226 GTTTCGATAGCACTTTCGATATCATCACCGTGAATACCCACGGCAACACGCATGATCATT 692285 Query 112076 TACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATA-GCTCTTCTCAAGGGT 112134 | || || ||| | | ||||| || ||| |||||| | || ||||||||| Sbjct 692286 TGTTGAGGACGCTCCGCAACTTTACCATCAAGACGTAAAAGATATGATC-GCTCAAGGGT 692344 Query 112135 TTTGAGACCAAAGTA 112149 |||| || ||||| Sbjct 692345 CTTGAACCCGAAGTA 692359 >seq9 Length=1212739 Score = 102 bits (112), Expect = 1e-16 Identities = 153/212 (72%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729 ||||||||| ||||| ||||| || ||||| || |||||| || || | ||||||||| Sbjct 165455 GTGGAGACCTTCATCACGGGAGATGAGTTCGTTGGAGAAGGTGAGTCCAGCCATGAGACC 165396 Query 122730 CCGCTTCTTCAACCAATAAATAGC-GCAGAATGACCCGGAGAAGAAGATACCCTCCACAC 122788 ||||| || | ||| | || | ||| || || || |||||||||||||| || ||| Sbjct 165395 ACGCTTTTTGAGCCAGAAGATTGATGCAAAA-GATCCAGAGAAGAAGATACCTTCAACAG 165337 Query 122789 ACGCAAACGCAAAAAGGCGTTCGGCGAAGG-AGCGAGACTTTGCATCAAACCATTTCATT 122847 || || |||| || |||| || |||| || | ||| | |||| |||||| | Sbjct 165336 CGGCGAATGCAACGAGACGTTGAGCAAAGGTAGAG-CTCTTATCTTCAATCCATTTGACA 165278 Query 122848 GCCCATTTCGCCTTCTTCTCAATACATGGTAC 122879 ||||| | ||||| |||| ||| || || || Sbjct 165277 GCCCAATCGGCCTTTTTCTTAATGCAAGGAAC 165246 >seq2 Length=2344949 Score = 96.9 bits (106), Expect = 4e-15 Identities = 172/251 (69%), Gaps = 0/251 (0%) Strand=Plus/Plus Query 164605 ATGGTCGTGTTGCACCACGATCCGGTCTCGCTGTGAAGCATGGTATTCAAGTTGGTGCGG 164664 |||| || | || ||||| ||||||||||| |||||| ||| | |||||| | Sbjct 1542139 ATGGCCGCATCGCCCCACGTTCCGGTCTCGCCTCTAAGCATATGATTGATACTGGTGCCG 1542198 Query 164665 GTGTTATTGATCCCGACTATACAGGTGAAGTCAAAGTCGTTCTCTTCAATCACGGAGACA 164724 |||| ||||| | || |||| ||| |||| | ||| | ||||| || ||||| || | Sbjct 1542199 GTGTAATTGACGCTGATTATAGGGGTCAAGTAAGAGTACTCCTCTTTAACCACGGCGAAA 1542258 Query 164725 AAGACTTTGAGGTAAAGAAAGGGGATCGCATCGCACAACTTGTCCTTGAGCGCTGTGAAA 164784 | || | |||||| ||| | || ||||| || ||||| | | | ||| | | | | Sbjct 1542259 AGGATTATGAGGTGAAGGAGGGCGATCGTATTGCACAGTTGATTTTGGAGAGGATTTATA 1542318 Query 164785 CACCCGATGTGGAGGAAATTGGTGTTCTTGAAGAGACGGAGAGAGGTGCGGGTGGATTTG 164844 |||| || || |||| | ||| | ||||||| | ||| |||| ||| || || | Sbjct 1542319 CACCTGAGGTCACGGAAGTCTTGGTTTTGGAAGAGAGTGTGAGGGGTGAGGGGGGTTTCG 1542378 Query 164845 GATCTACTGGT 164855 || ||||||| Sbjct 1542379 GAAGTACTGGT 1542389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628027109200800