Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20glacialis_20[genbank_20GCA_5F002162575.1_202017-05-31] 623 sequences; 41,098,534 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq3 138 1e-27 seq5 91.5 2e-13 >seq3 Length=2126074 Score = 138 bits (152), Expect = 1e-27 Identities = 388/592 (66%), Gaps = 4/592 (1%) Strand=Plus/Minus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACG 53252 ||||||| || ||| ||||||| |||||||| || | ||| || || ||| Sbjct 692280 TCATGCGTGTTGCCGTGGGTATTCACGGTGATGATATCGAAAGTGCTATCGAAACATACA 692221 Query 53253 ACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGA 53312 |||| ||| | ||||||||||| || || | ||||| || || || ||||| Sbjct 692220 ACTTGATGTCAAACAAGTACTTTACACATGCTTCCCCAACGCTCTTTTCTGCGGGTACTC 692161 Query 53313 ATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCA 53372 || | || | ||| |||||||| | | ||||| || || || || || | Sbjct 692160 CACAAGCACAACTTTCGTCGTGCTTCCTCATCGACATGAAAGAGGATAGTATTGATGGTA 692101 Query 53373 TCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCC 53432 ||||||| || | ||| |||||| ||||| ||| | |||||||| ||| || Sbjct 692100 TCTACGATACTTTGAAGATTTGTGCCATGATCTCAAAGAATGCCGGTGGTATTGGTCTCA 692041 Query 53433 AC-TGCTC-GAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGA 53490 || | | | ||| ||||||| | || || ||| || || || || || | Sbjct 692040 ACATTCACAGAA--TCCGTGCTACTGGTGCATACATCGCCGGTACTAATGGAAATTCCAA 691983 Query 53491 TGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGG 53550 ||| || || || ||||| || || ||||||||||| || | || || | |||||||| Sbjct 691982 TGGTATTGTTCCCATGCTTCGAGTTTTCAACAACACTGCAAGATATGTTGATCAGGGTGG 691923 Query 53551 TGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGA 53610 | || ||| ||| | || || | ||||| ||||| ||||| ||||| || | || Sbjct 691922 TAACAAACGCCCGGGTGCTTTTGCTGTTTACCTTGAGCCATGGCATGCCGATGTTTTCGA 691863 Query 53611 GTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTAC 53670 |||||| || || || ||| || ||| | ||||| | ||| || || || || Sbjct 691862 GTTTCTTGATCTACGCAAGAACCACGGTAAGGAAGAAGTTCGCGCACGCGATCTCTTCTA 691803 Query 53671 AGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCT 53730 || |||||||||| || | |||||| | || || ||| | | || ||| || Sbjct 691802 TGCCTTGTGGATTCCTGATTTGTTCATGAAGCGTGTCGAAAAGAATGGAGAATGGACTCT 691743 Query 53731 GATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTT 53782 |||||||| || || ||||| || | | ||| || || ||||||||| Sbjct 691742 TATGTGCCCCAATGAATGCCCTGGTTTGGCAGATGTTTATGGCGAGGAGTTT 691691 >seq5 Length=1928780 Score = 91.5 bits (100), Expect = 2e-13 Identities = 197/290 (68%), Gaps = 6/290 (2%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 |||||||||||||| | ||| |||||||| | || || ||| | |||| || | | Sbjct 1437088 GTGAAAATGTAACGGGCGCTAGCAGCATCGCTACCTCCCTGAAGTCTACTACCAAAATTT 1437029 Query 117365 CCACTCGGCTCCAAGA-GGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGAC 117423 ||||| |||| ||||| ||| | ||||| | || ||||| |||||||| | | || Sbjct 1437028 CCACTTGGCT-CAAGACAGTTAACATTGTTCGAACCGACAAAATTTTGAGCGAGGCCAAC 1436970 Query 117424 AATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCC--GTCTGCTCCGCCACGTAG 117481 ||| || ||| | |||||||| |||||||| ||| | || | | || || Sbjct 1436969 AATGGTCATTTGCATCGAAGCCTCACCGTGGTGATAGGCCGAGACTTGACTG--ACATAA 1436912 Query 117482 CCCGCCAGCTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATC 117541 || || || | | | || |||||||| || ||||| ||||| ||| || || || Sbjct 1436911 CCAGCGAGTTCAACAACTTTCATGTCATTTGTAAGGTTGCGCTTGAAGCAAGCGTACATA 1436852 Query 117542 ACCTTGCGCTGACTTGGCTTCAGACCATCCGCCACGTGAGGGATCGAACG 117591 || || || || | ||||| ||||| || ||| ||| || ||||| Sbjct 1436851 ACTTTTCGTTGCCCCGGCTTGAGACCGTCAATGACGGAAGGAATGGAACG 1436802 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547211738555400