Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20glacialis_20[genbank_20GCA_5F002162575.1_202017-05-31]
623 sequences; 41,098,534 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq3 138 1e-27
seq5 91.5 2e-13
>seq3
Length=2126074
Score = 138 bits (152), Expect = 1e-27
Identities = 388/592 (66%), Gaps = 4/592 (1%)
Strand=Plus/Minus
Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACG 53252
||||||| || ||| ||||||| |||||||| || | ||| || || |||
Sbjct 692280 TCATGCGTGTTGCCGTGGGTATTCACGGTGATGATATCGAAAGTGCTATCGAAACATACA 692221
Query 53253 ACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGA 53312
|||| ||| | ||||||||||| || || | ||||| || || || |||||
Sbjct 692220 ACTTGATGTCAAACAAGTACTTTACACATGCTTCCCCAACGCTCTTTTCTGCGGGTACTC 692161
Query 53313 ATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCA 53372
|| | || | ||| |||||||| | | ||||| || || || || || |
Sbjct 692160 CACAAGCACAACTTTCGTCGTGCTTCCTCATCGACATGAAAGAGGATAGTATTGATGGTA 692101
Query 53373 TCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCC 53432
||||||| || | ||| |||||| ||||| ||| | |||||||| ||| ||
Sbjct 692100 TCTACGATACTTTGAAGATTTGTGCCATGATCTCAAAGAATGCCGGTGGTATTGGTCTCA 692041
Query 53433 AC-TGCTC-GAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGA 53490
|| | | | ||| ||||||| | || || ||| || || || || || |
Sbjct 692040 ACATTCACAGAA--TCCGTGCTACTGGTGCATACATCGCCGGTACTAATGGAAATTCCAA 691983
Query 53491 TGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGG 53550
||| || || || ||||| || || ||||||||||| || | || || | ||||||||
Sbjct 691982 TGGTATTGTTCCCATGCTTCGAGTTTTCAACAACACTGCAAGATATGTTGATCAGGGTGG 691923
Query 53551 TGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGA 53610
| || ||| ||| | || || | ||||| ||||| ||||| ||||| || | ||
Sbjct 691922 TAACAAACGCCCGGGTGCTTTTGCTGTTTACCTTGAGCCATGGCATGCCGATGTTTTCGA 691863
Query 53611 GTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTAC 53670
|||||| || || || ||| || ||| | ||||| | ||| || || || ||
Sbjct 691862 GTTTCTTGATCTACGCAAGAACCACGGTAAGGAAGAAGTTCGCGCACGCGATCTCTTCTA 691803
Query 53671 AGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCT 53730
|| |||||||||| || | |||||| | || || ||| | | || ||| ||
Sbjct 691802 TGCCTTGTGGATTCCTGATTTGTTCATGAAGCGTGTCGAAAAGAATGGAGAATGGACTCT 691743
Query 53731 GATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTT 53782
|||||||| || || ||||| || | | ||| || || |||||||||
Sbjct 691742 TATGTGCCCCAATGAATGCCCTGGTTTGGCAGATGTTTATGGCGAGGAGTTT 691691
>seq5
Length=1928780
Score = 91.5 bits (100), Expect = 2e-13
Identities = 197/290 (68%), Gaps = 6/290 (2%)
Strand=Plus/Minus
Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364
|||||||||||||| | ||| |||||||| | || || ||| | |||| || | |
Sbjct 1437088 GTGAAAATGTAACGGGCGCTAGCAGCATCGCTACCTCCCTGAAGTCTACTACCAAAATTT 1437029
Query 117365 CCACTCGGCTCCAAGA-GGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGAC 117423
||||| |||| ||||| ||| | ||||| | || ||||| |||||||| | | ||
Sbjct 1437028 CCACTTGGCT-CAAGACAGTTAACATTGTTCGAACCGACAAAATTTTGAGCGAGGCCAAC 1436970
Query 117424 AATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCC--GTCTGCTCCGCCACGTAG 117481
||| || ||| | |||||||| |||||||| ||| | || | | || ||
Sbjct 1436969 AATGGTCATTTGCATCGAAGCCTCACCGTGGTGATAGGCCGAGACTTGACTG--ACATAA 1436912
Query 117482 CCCGCCAGCTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATC 117541
|| || || | | | || |||||||| || ||||| ||||| ||| || || ||
Sbjct 1436911 CCAGCGAGTTCAACAACTTTCATGTCATTTGTAAGGTTGCGCTTGAAGCAAGCGTACATA 1436852
Query 117542 ACCTTGCGCTGACTTGGCTTCAGACCATCCGCCACGTGAGGGATCGAACG 117591
|| || || || | ||||| ||||| || ||| ||| || |||||
Sbjct 1436851 ACTTTTCGTTGCCCCGGCTTGAGACCGTCAATGACGGAAGGAATGGAACG 1436802
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547211738555400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |