Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20glacialis_20[genbank_20GCA_5F002162575.1_202017-05-31]
623 sequences; 41,098,534 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq18 188 8e-43
seq34 179 4e-40
seq5 140 4e-28
seq3 123 3e-23
>seq18
Length=877782
Score = 188 bits (208), Expect = 8e-43
Identities = 178/227 (78%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| |||||||| || ||||| ||||| || ||| | |||||||||||
Sbjct 575576 ATGCAGATCTTCGTCAAGACTCTCACCGGAAAGACAATCACTTTAGAGGTTGAGTCGTCG 575517
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| ||| | ||| |||||||||| ||||| ||||| ||||| || || || |||||
Sbjct 575516 GATACCATCGACAATGTGAAGGCTAAGATTCAAGACAAAGAGGGTATCCCACCTGACCAA 575457
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|| ||||| || ||||||||||||||||| ||||||| || || || | ||||| ||
Sbjct 575456 CAACGTCTTATCTTTGCTGGTAAGCAACTTGAGGATGGCCGAACTCTTTCCGACTACAAC 575397
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
||||||| ||||| ||| | ||| | ||| | |||||||| |||||
Sbjct 575396 ATCCAAAAAGAATCAACTTTACATTTGGTCCTTCGTCTTCGTGGTGG 575350
Score = 150 bits (166), Expect = 2e-31
Identities = 155/203 (76%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489
|| || ||||| || || |||||||| ||||| | || | |||| ||| | || ||
Sbjct 576064 ACTGGAAAGACCATCACCCTTGAGGTCGAGTCCAGCGACACTATTGACAATGTCAAAGCC 576005
Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549
|| || || ||||||||||| |||||||| || || |||||| | ||||| || || |||
Sbjct 576004 AAGATCCAAGACAAGGAGGGGATTCCTCCCGATCAACAGCGTTTGATTTTCGCAGGCAAG 575945
Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609
||||| || |||| ||| ||||| ||||||| || | || ||||| ||||| ||||||
Sbjct 575944 CAACTTGAAGATGGTCGCACCCTCTCAGACTACAACATTCAGAAGGAGTCCACACTTCAT 575885
Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632
|| ||| | || ||||| |||||
Sbjct 575884 CTCGTCCTCCGCCTTCGTGGTGG 575862
Score = 120 bits (132), Expect = 3e-22
Identities = 173/243 (71%), Gaps = 2/243 (1%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
|||||||||||||| ||||| | || || |||||||| || | ||||| || ||
Sbjct 575348 ATGCAAATCTTTGTTAAGACCTTGACTGGAAAGACTATCACATTAGAGGTAGAATCTTCG 575289
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| |||| ||| | |||||||| |||||||| |||||||| ||||| || || ||
Sbjct 575288 GATACTATTGATAATGTCAAGGCTAAGATTCAGGATAAGGAGGGCATTCCACCTGATCAA 575229
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||||| | || || ||||| ||||| | ||||| | | || || || || ||
Sbjct 575228 CAGCGATTGATCTTCGCTGGAAAGCAGTTGGAGGACGGCAGAACTCTTTTGGATTACAAC 575169
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACAAGTTTAAAGT 27645
| ||||||||| ||| | || | || | |||||||| ||||| ||| | || ||
Sbjct 575168 ATTCAAAAGGAAAGCACCTTGCACTTGGTGCTCCGTCTTCGTGGTGGTCAA--TAAATGT 575111
Query 27646 TTT 27648
|||
Sbjct 575110 TTT 575108
>seq34
Length=376069
Score = 179 bits (198), Expect = 4e-40
Identities = 176/227 (78%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| |||||||| || || ||||| ||||| || || |||||||||||
Sbjct 166531 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAAACTATCACCCTCGAGGTTGAGTCTTCG 166472
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||| | ||| | ||||| || || || ||||||||||||||||| || |||||
Sbjct 166471 GACACCATCGACAATGTCAAGGCCAAGATCCAAGACAAGGAGGGAATTCCACCCGACCAA 166412
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||||| | || || || || |||||||||||||||| || ||||| | ||||| ||
Sbjct 166411 CAGCGATTGATCTTCGCCGGAAAGCAACTCGAGGATGGCCGCACCCTTTCCGACTACAAC 166352
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||||||||| ||||||||||| | || || ||||| || |||||
Sbjct 166351 ATCCAAAAGGAGTCCACTCTTCACTTGGTGTTACGTCTCCGTGGTGG 166305
>seq5
Length=1928780
Score = 140 bits (154), Expect = 4e-28
Identities = 140/182 (77%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 27414 CTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCAT 27473
||| |||||||| ||||| |||||||| || || |||||||| ||||| ||| | ||
Sbjct 1275304 CTTCGTCAAGACCCTTACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCTGACACTAT 1275245
Query 27474 TGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCT 27533
| ||| | |||||||| || || ||||||||||||||||| || || || || ||| |
Sbjct 1275244 CGACAATGTTAAGGCTAAGATCCAAGACAAGGAGGGAATTCCCCCCGATCAACAACGTTT 1275185
Query 27534 AATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAA 27593
|| || ||||| |||||||| ||||| | ||||| || |||| || || |||||||
Sbjct 1275184 GATCTTCGCTGGAAAGCAACTTGAGGACGGACGTACTCTTTCAGATTACAACATCCAAAA 1275125
Query 27594 GG 27595
||
Sbjct 1275124 GG 1275123
Score = 114 bits (126), Expect = 1e-20
Identities = 201/290 (69%), Gaps = 6/290 (2%)
Strand=Plus/Plus
Query 31963 CGGTCCATTCCACACGTGGCGGACGGCCTCAAGCCTTCACAGCGCAAGGTGATATACGCC 32022
|| |||||||| ||| ||||| |||||||| || || || || || |||||
Sbjct 1436802 CGTTCCATTCCTTCCGTCATTGACGGTCTCAAGCCGGGGCAACGAAAAGTTATGTACGCT 1436861
Query 32023 TGCCTCAAGAAGAACCTGTCGAGTGACATGAAGGTGGCGCAGCTGTCGGGCTACGTGGCA 32082
||| ||||| ||||| | | ||||||||| || | | || | || || || ||
Sbjct 1436862 TGCTTCAAGCGCAACCTTACAAATGACATGAAAGTTGTTGAACTCGCTGGTTATGT--CA 1436919
Query 32083 GAGCAAA---CGGCCTATCACCACGGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCTT 32139
| ||| |||||||||||||||| ||||| ||| | || |||||||| |||
Sbjct 1436920 GT-CAAGTCTCGGCCTATCACCACGGTGAGGCTTCGATGCAAATGACCATTGTTGGCCTC 1436978
Query 32140 GCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCATCTGGACAGTTTGGG 32199
||||| || ||||||||| | || || | |||| || |||||| |||| | |||||
Sbjct 1436979 GCTCAAAATTTTGTCGGTTCGAACAATGTTAACTGTCTTGAGCCAAGTGGAAATTTTGGT 1437038
Query 32200 ACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACATCTTCAC 32249
| | || || || | |||||||| ||| |||||||||| |||||
Sbjct 1437039 AGTAGACTTCAGGGAGGTAGCGATGCTGCTAGCGCCCGTTACATTTTCAC 1437088
>seq3
Length=2126074
Score = 123 bits (136), Expect = 3e-23
Identities = 510/799 (64%), Gaps = 9/799 (1%)
Strand=Plus/Plus
Query 80948 ACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTG 81007
|||||||||| || |||||||| || || ||| ||||| ||||| || |||||
Sbjct 691489 ACTCGACGATCTCTGTGCACAAGTTGGAGCTGCGAATAGTACCAAGGTTCTTTTGGTTGC 691548
Query 81008 ACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACT 81067
||| |||||| || || ||||| |||| | || | ||||| ||| || | ||
Sbjct 691549 TCTTCTTGTTGCATGCATCTTTGTAAAGCATGAAAGGATTTCCGGTTTCGGTTTGAGCCT 691608
Query 81068 TGAGGATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCA 81127
|| || | || ||| | || | ||||||| |||||| || ||| |
Sbjct 691609 CAAGAATAGAGTACCAGAGCTTTTGAGCCTTGATAGTCTTGCGACCCTTTCCTGCCTTTT 691668
Query 81128 CATACTTGGCGTAAGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACT 81187
|||| | |||| | || |||| | || | || || | | | ||||| |
Sbjct 691669 CATAACTCTCGTAGAGGGCCTCAAACTCCTCGCCATAAACATCTGCCAAACCAGGGCATT 691728
Query 81188 CGTTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAG 81247
| || |||||||| || ||| || | || || ||| ||||||||| ||||
Sbjct 691729 CATTGGGGCACATAAGAGTCCATTCTCCATTCTTTTCGACACGCTTCATGAACAAATCAG 691788
Query 81248 GGATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGGC 81307
| ||||| | ||| ||| || ||||| ||| | || || | ||| ||||| ||
Sbjct 691789 GAATCCACAAGGCATAGAAGAGATCGCGTGCGCGAACTTCTTCCTTACCGTGGTTCTTGC 691848
Query 81308 GCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACC 81367
| | || ||||| || | | || |||||||||||||| || || || || | | |
Sbjct 691849 GTAGATCAAGAAACTCGAAAACATCGGCATGCCATGGCTCAAGGTAAACAGCAAAAGCAC 691908
Query 81368 CCTTGCGACGG---CCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACA 81424
|| ||| | |||||||| | || || | ||||| ||| || || || | ||
Sbjct 691909 CCGGGCGTTTGTTACCACCCTGATCAACATATCTTGCAGTGTTGTTGAAAACTCGAAGCA 691968
Query 81425 TAGGGATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCA 81484
| || | ||||||| || | || || ||||| |||| | || | || || |
Sbjct 691969 TGGGAACAATACCATTGGAATTTCCATTAGTACCGGCGATGTATGCACCAGTAGCACGGA 692028
Query 81485 CCTTGCTGATTG-AAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTC 81543
|| ||| || ||||| || ||||| | |||||| ||| ||||| |||
Sbjct 692029 TTCTG-TGAATGTTGAGACCAATACCACCGGCATTCTTTGAGATCATGGCACAAATCTTC 692087
Query 81544 ATGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGAC 81603
| || || || || || || || ||||| | ||||||||| | | ||| || ||
Sbjct 692088 AAAGTATCGTAGATACCATCAATACTATCCTCTTTCATGTCGATGAGGAAGCACGACGAA 692147
Query 81604 ATCTGAGGGCTTTTTGAG--CCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAAC 81661
| | | |||| | ||| || ||| || || ||||||| || || | || ||
Sbjct 692148 AGTT--GTGCTTGTGGAGTACCCGCAGAAAAGAGCGTTGGGGAAGCATGTGTAAAGTACT 692205
Query 81662 GGTTTGACATCAGGTCATAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGA 81721
||||||||||| || || ||||| | | | | ||||| |||||||||||||| |
Sbjct 692206 TGTTTGACATCAAGTTGTATGTTTCGATAGCACTTTCGATATCATCACCGTGAATACCCA 692265
Query 81722 TAGCTACACGCATAAACAT 81740
|| |||||||| | |||
Sbjct 692266 CGGCAACACGCATGATCAT 692284
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570305958707760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |