Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20glacialis_20[genbank_20GCA_5F002162575.1_202017-05-31] 623 sequences; 41,098,534 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq18 188 8e-43 seq34 179 4e-40 seq5 140 4e-28 seq3 123 3e-23 >seq18 Length=877782 Score = 188 bits (208), Expect = 8e-43 Identities = 178/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || ||||| ||||| || ||| | ||||||||||| Sbjct 575576 ATGCAGATCTTCGTCAAGACTCTCACCGGAAAGACAATCACTTTAGAGGTTGAGTCGTCG 575517 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||| | ||| |||||||||| ||||| ||||| ||||| || || || ||||| Sbjct 575516 GATACCATCGACAATGTGAAGGCTAAGATTCAAGACAAAGAGGGTATCCCACCTGACCAA 575457 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||||| || ||||||||||||||||| ||||||| || || || | ||||| || Sbjct 575456 CAACGTCTTATCTTTGCTGGTAAGCAACTTGAGGATGGCCGAACTCTTTCCGACTACAAC 575397 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||||| ||||| ||| | ||| | ||| | |||||||| ||||| Sbjct 575396 ATCCAAAAAGAATCAACTTTACATTTGGTCCTTCGTCTTCGTGGTGG 575350 Score = 150 bits (166), Expect = 2e-31 Identities = 155/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 || || ||||| || || |||||||| ||||| | || | |||| ||| | || || Sbjct 576064 ACTGGAAAGACCATCACCCTTGAGGTCGAGTCCAGCGACACTATTGACAATGTCAAAGCC 576005 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || || || ||||||||||| |||||||| || || |||||| | ||||| || || ||| Sbjct 576004 AAGATCCAAGACAAGGAGGGGATTCCTCCCGATCAACAGCGTTTGATTTTCGCAGGCAAG 575945 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 ||||| || |||| ||| ||||| ||||||| || | || ||||| ||||| |||||| Sbjct 575944 CAACTTGAAGATGGTCGCACCCTCTCAGACTACAACATTCAGAAGGAGTCCACACTTCAT 575885 Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632 || ||| | || ||||| ||||| Sbjct 575884 CTCGTCCTCCGCCTTCGTGGTGG 575862 Score = 120 bits (132), Expect = 3e-22 Identities = 173/243 (71%), Gaps = 2/243 (1%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||||||||| ||||| | || || |||||||| || | ||||| || || Sbjct 575348 ATGCAAATCTTTGTTAAGACCTTGACTGGAAAGACTATCACATTAGAGGTAGAATCTTCG 575289 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| ||| | |||||||| |||||||| |||||||| ||||| || || || Sbjct 575288 GATACTATTGATAATGTCAAGGCTAAGATTCAGGATAAGGAGGGCATTCCACCTGATCAA 575229 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| | || || ||||| ||||| | ||||| | | || || || || || Sbjct 575228 CAGCGATTGATCTTCGCTGGAAAGCAGTTGGAGGACGGCAGAACTCTTTTGGATTACAAC 575169 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACAAGTTTAAAGT 27645 | ||||||||| ||| | || | || | |||||||| ||||| ||| | || || Sbjct 575168 ATTCAAAAGGAAAGCACCTTGCACTTGGTGCTCCGTCTTCGTGGTGGTCAA--TAAATGT 575111 Query 27646 TTT 27648 ||| Sbjct 575110 TTT 575108 >seq34 Length=376069 Score = 179 bits (198), Expect = 4e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || || ||||| ||||| || || ||||||||||| Sbjct 166531 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAAACTATCACCCTCGAGGTTGAGTCTTCG 166472 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | ||||| || || || ||||||||||||||||| || ||||| Sbjct 166471 GACACCATCGACAATGTCAAGGCCAAGATCCAAGACAAGGAGGGAATTCCACCCGACCAA 166412 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| | || || || || |||||||||||||||| || ||||| | ||||| || Sbjct 166411 CAGCGATTGATCTTCGCCGGAAAGCAACTCGAGGATGGCCGCACCCTTTCCGACTACAAC 166352 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||||||||| ||||||||||| | || || ||||| || ||||| Sbjct 166351 ATCCAAAAGGAGTCCACTCTTCACTTGGTGTTACGTCTCCGTGGTGG 166305 >seq5 Length=1928780 Score = 140 bits (154), Expect = 4e-28 Identities = 140/182 (77%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 27414 CTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCAT 27473 ||| |||||||| ||||| |||||||| || || |||||||| ||||| ||| | || Sbjct 1275304 CTTCGTCAAGACCCTTACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCTGACACTAT 1275245 Query 27474 TGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCT 27533 | ||| | |||||||| || || ||||||||||||||||| || || || || ||| | Sbjct 1275244 CGACAATGTTAAGGCTAAGATCCAAGACAAGGAGGGAATTCCCCCCGATCAACAACGTTT 1275185 Query 27534 AATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAA 27593 || || ||||| |||||||| ||||| | ||||| || |||| || || ||||||| Sbjct 1275184 GATCTTCGCTGGAAAGCAACTTGAGGACGGACGTACTCTTTCAGATTACAACATCCAAAA 1275125 Query 27594 GG 27595 || Sbjct 1275124 GG 1275123 Score = 114 bits (126), Expect = 1e-20 Identities = 201/290 (69%), Gaps = 6/290 (2%) Strand=Plus/Plus Query 31963 CGGTCCATTCCACACGTGGCGGACGGCCTCAAGCCTTCACAGCGCAAGGTGATATACGCC 32022 || |||||||| ||| ||||| |||||||| || || || || || ||||| Sbjct 1436802 CGTTCCATTCCTTCCGTCATTGACGGTCTCAAGCCGGGGCAACGAAAAGTTATGTACGCT 1436861 Query 32023 TGCCTCAAGAAGAACCTGTCGAGTGACATGAAGGTGGCGCAGCTGTCGGGCTACGTGGCA 32082 ||| ||||| ||||| | | ||||||||| || | | || | || || || || Sbjct 1436862 TGCTTCAAGCGCAACCTTACAAATGACATGAAAGTTGTTGAACTCGCTGGTTATGT--CA 1436919 Query 32083 GAGCAAA---CGGCCTATCACCACGGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCTT 32139 | ||| |||||||||||||||| ||||| ||| | || |||||||| ||| Sbjct 1436920 GT-CAAGTCTCGGCCTATCACCACGGTGAGGCTTCGATGCAAATGACCATTGTTGGCCTC 1436978 Query 32140 GCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCATCTGGACAGTTTGGG 32199 ||||| || ||||||||| | || || | |||| || |||||| |||| | ||||| Sbjct 1436979 GCTCAAAATTTTGTCGGTTCGAACAATGTTAACTGTCTTGAGCCAAGTGGAAATTTTGGT 1437038 Query 32200 ACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACATCTTCAC 32249 | | || || || | |||||||| ||| |||||||||| ||||| Sbjct 1437039 AGTAGACTTCAGGGAGGTAGCGATGCTGCTAGCGCCCGTTACATTTTCAC 1437088 >seq3 Length=2126074 Score = 123 bits (136), Expect = 3e-23 Identities = 510/799 (64%), Gaps = 9/799 (1%) Strand=Plus/Plus Query 80948 ACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTG 81007 |||||||||| || |||||||| || || ||| ||||| ||||| || ||||| Sbjct 691489 ACTCGACGATCTCTGTGCACAAGTTGGAGCTGCGAATAGTACCAAGGTTCTTTTGGTTGC 691548 Query 81008 ACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACT 81067 ||| |||||| || || ||||| |||| | || | ||||| ||| || | || Sbjct 691549 TCTTCTTGTTGCATGCATCTTTGTAAAGCATGAAAGGATTTCCGGTTTCGGTTTGAGCCT 691608 Query 81068 TGAGGATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCA 81127 || || | || ||| | || | ||||||| |||||| || ||| | Sbjct 691609 CAAGAATAGAGTACCAGAGCTTTTGAGCCTTGATAGTCTTGCGACCCTTTCCTGCCTTTT 691668 Query 81128 CATACTTGGCGTAAGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACT 81187 |||| | |||| | || |||| | || | || || | | | ||||| | Sbjct 691669 CATAACTCTCGTAGAGGGCCTCAAACTCCTCGCCATAAACATCTGCCAAACCAGGGCATT 691728 Query 81188 CGTTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAG 81247 | || |||||||| || ||| || | || || ||| ||||||||| |||| Sbjct 691729 CATTGGGGCACATAAGAGTCCATTCTCCATTCTTTTCGACACGCTTCATGAACAAATCAG 691788 Query 81248 GGATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGGC 81307 | ||||| | ||| ||| || ||||| ||| | || || | ||| ||||| || Sbjct 691789 GAATCCACAAGGCATAGAAGAGATCGCGTGCGCGAACTTCTTCCTTACCGTGGTTCTTGC 691848 Query 81308 GCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACC 81367 | | || ||||| || | | || |||||||||||||| || || || || | | | Sbjct 691849 GTAGATCAAGAAACTCGAAAACATCGGCATGCCATGGCTCAAGGTAAACAGCAAAAGCAC 691908 Query 81368 CCTTGCGACGG---CCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACA 81424 || ||| | |||||||| | || || | ||||| ||| || || || | || Sbjct 691909 CCGGGCGTTTGTTACCACCCTGATCAACATATCTTGCAGTGTTGTTGAAAACTCGAAGCA 691968 Query 81425 TAGGGATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCA 81484 | || | ||||||| || | || || ||||| |||| | || | || || | Sbjct 691969 TGGGAACAATACCATTGGAATTTCCATTAGTACCGGCGATGTATGCACCAGTAGCACGGA 692028 Query 81485 CCTTGCTGATTG-AAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTC 81543 || ||| || ||||| || ||||| | |||||| ||| ||||| ||| Sbjct 692029 TTCTG-TGAATGTTGAGACCAATACCACCGGCATTCTTTGAGATCATGGCACAAATCTTC 692087 Query 81544 ATGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGAC 81603 | || || || || || || || ||||| | ||||||||| | | ||| || || Sbjct 692088 AAAGTATCGTAGATACCATCAATACTATCCTCTTTCATGTCGATGAGGAAGCACGACGAA 692147 Query 81604 ATCTGAGGGCTTTTTGAG--CCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAAC 81661 | | | |||| | ||| || ||| || || ||||||| || || | || || Sbjct 692148 AGTT--GTGCTTGTGGAGTACCCGCAGAAAAGAGCGTTGGGGAAGCATGTGTAAAGTACT 692205 Query 81662 GGTTTGACATCAGGTCATAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGA 81721 ||||||||||| || || ||||| | | | | ||||| |||||||||||||| | Sbjct 692206 TGTTTGACATCAAGTTGTATGTTTCGATAGCACTTTCGATATCATCACCGTGAATACCCA 692265 Query 81722 TAGCTACACGCATAAACAT 81740 || |||||||| | ||| Sbjct 692266 CGGCAACACGCATGATCAT 692284 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570305958707760