Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20glacialis_20[genbank_20GCA_5F002162575.1_202017-05-31]
623 sequences; 41,098,534 total letters
Query= NC_028491.1
Length=98392
Score E
Sequences producing significant alignments: (Bits) Value
seq34 116 2e-21
seq18 100 2e-16
seq5 96.9 2e-15
>seq34
Length=376069
Score = 116 bits (128), Expect = 2e-21
Identities = 106/134 (79%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||| |||||||| || |||||| ||||||||| ||||| || || ||||| || ||
Sbjct 166314 AGACGTAACACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAAAGGGTGCGG 166373
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
| || || ||||| || ||||| || || || ||||||||||| || || | |||||||
Sbjct 166374 CCATCCTCGAGTTGCTTTCCGGCGAAGATCAATCGCTGTTGGTCGGGTGGAATTCCCTCC 166433
Query 34609 TTGTCTGTGATCTT 34622
|||||| ||||||
Sbjct 166434 TTGTCTTGGATCTT 166447
>seq18
Length=877782
Score = 100 bits (110), Expect = 2e-16
Identities = 97/125 (78%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557
|||||||||||||| |||||| || |||||||| ||||| || || || | || |||
Sbjct 575596 ACCAAATGGAGAGTAGACTCCTTCTGGATGTTATAGTCTGAGAGGGTACGACCATCCTCA 575655
Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617
||||| || ||||| || || ||||| |||||||| || || | ||||| ||||||
Sbjct 575656 AGTTGCTTTCCGGCGAAAATCAAACGTTGTTGGTCGGGTGGGATGCCCTCTTTGTCTTGA 575715
Query 34618 ATCTT 34622
|||||
Sbjct 575716 ATCTT 575720
Score = 96.9 bits (106), Expect = 2e-15
Identities = 107/143 (75%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| || | ||| || | || | ||| || ||| |||||| |||||||| || |||||
Sbjct 575862 CCACCACGAAGGCGGAGGACGAGATGAAGTGTGGACTCCTTCTGAATGTTGTAGTCTGAG 575921
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
|| || || | ||||||||||| || || || || || ||||||||||| || || ||
Sbjct 575922 AGGGTGCGACCATCTTCAAGTTGCTTGCCTGCGAAAATCAAACGCTGTTGATCGGGAGGA 575981
Query 34600 ACTCCCTCCTTGTCTGTGATCTT 34622
| |||||||||||| ||||||
Sbjct 575982 ATCCCCTCCTTGTCTTGGATCTT 576004
Score = 84.2 bits (92), Expect = 1e-11
Identities = 99/134 (74%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| || | |||||| | |||||| || | ||||| |||||||||||||| ||||| ||
Sbjct 575122 CCACCACGAAGACGGAGCACCAAGTGCAAGGTGCTTTCCTTTTGAATGTTGTAATCCAAA 575181
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
|| |||| |||| || | || || || || || || || |||||||| || || ||
Sbjct 575182 AGAGTTCTGCCGTCCTCCAACTGCTTTCCAGCGAAGATCAATCGCTGTTGATCAGGTGGA 575241
Query 34600 ACTCCCTCCTTGTC 34613
| |||||||| ||
Sbjct 575242 ATGCCCTCCTTATC 575255
>seq5
Length=1928780
Score = 96.9 bits (106), Expect = 2e-15
Identities = 85/106 (80%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 34517 CCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATA 34576
||||||| ||||| ||||||||||| || || |||| |||||||| || || || || |
Sbjct 1275123 CCTTTTGGATGTTGTAATCTGAAAGAGTACGTCCGTCCTCAAGTTGCTTTCCAGCGAAGA 1275182
Query 34577 TTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTT 34622
| ||||| ||||| || || || | ||||||||||||| ||||||
Sbjct 1275183 TCAAACGTTGTTGATCGGGGGGAATTCCCTCCTTGTCTTGGATCTT 1275228
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 314727210317159
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |